RNA id: XM_034298157.1


Basic Information

Item Value
RNA id XM_034298157.1
length 4575
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC113541280
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18816234 ~ 18931272 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGTAGTTTGTCACATTGTATCCAATCAGCGAGAAGATTTTTTCTGCATAGTGCCAGCTAAACCAATCATATTTGATCAGAGGCGGGACTTCGCGGTGTGTTTACTTCCATGAGAGCCAGAAGGACGCCGTTGACTAGCCAACGGTAAATATTGACAGTACAGGGAGACTTTATAACTTTGTAAAAACGTTTAAATGGAGGTCTTTATTTTGACAAGAAGTTTCATAAACTGTAAATGACACTCTCTGACACTAGGTTAGTTAGTTAGGCTGTGGGATTTCATTTAGAAGTTGCATTGAAGGATGTCATCGGCTTAACTTTAGACTGTTGGAAGTGTGAATGAAGATGGACAAAAGCAGTAGCTCGGTTTTGGAGATGAAACGTAGTTGTCTCGTCAGTAAATCAGTGAAATGTTTGCTGAATGAGGTCCAGAGTGTGTACGGAGAGAAGCTCAGGCGCCTTGAGTGGGAAATGAAAGGCTCCCAGGAGGAGATTCTGCGGGTGAAGGATTTGGACCATCAGAAGAGGCGCCTCGAGGAAGACAACAAGCGCCTGAGAGCTGAGATTCAGCAGCTGAAGGCTGACACTCGAACCCTTACACGTGTGATCCAAGAGGCTCAGCGTGCACACGGCCTGGACGTCACAGGGCTCACATTAAGGACACAGCCACTGGATTGCATCACAGACCAATCAGCTCATAGCAGTCAGCTATCGCAGAAGCCAGGCGACCTTATGAAGGCTCAGGTGGAGGATCTGCGGAATCAGCTGAAGACCAAAAACAGGATTATTCAACGTCTGGAAGAGGAAATTAAGATGCTTTTGTCCCACAGAATCCAGGAGAAGAATGAGttgcaGGGCAGGAGGGTTGCAGAAGCTCTGGAGGAGGTGTGTAAAGAGGAGGCGTGTAAGCCGAGCGTGGTGCAGAAGCgaactcactcacacactgagcagCGGCAGACCAGTGAGGAGAAAGTTAATAGCCCGGGTTTAGACGTCGGCCTGCTCAAGTCCAAATTACAGGAAAAGACGGAACAATCTCAACAGCTGCGAGATCAAATTCTCAAGCAGCAGGAGGCTTTAAGTAGGGCAAGGCGAAGTCTCAGAGACACCACCAGAGCAGCTGGCAGTAAGATACATAAGACAGAAAGCAGGCTGTCTGCGGCCCAGAAGCGACTACACGAGACCAAGAAGCAGCTCAAAGAGCTGAAAAAAGAGtgtgaacaaaaacagaacGAGGTGGAGAAGCTGCAAGAAGAGATCACAAAGCGTGAAGTGCTGGAGAAGGAGAACGCCGAGGAGCTTCAGAGAGTAATCTCTGAGAAGAGAAACCTGGAGCTGGAGCTTGCCGTAATTGCCGAGAAACACAGAACGGCTCAACAGGAGGTGTCCAGTCGAGATCAGGTGATTCTGCAGCTGAGGGCGGAGCTTCGAGTCTCGGTGGAGAAGAACCAGGGAGTGCGGGAGGAGctggggCTGCAGGAGGCTGAGGTCAGCAGGCTTAATGAGAAGGTGAGGAAGCAGCAGGCCCACTTACAGGAGCTGAGAGAGATGTGTCGCCACGGAAACGCCCGGATGGACCAAGAACAGCAGAAAACACAGCAGCTCCAGAGTCAGTTACAGCTCGCCCAGCAACAGCTGAAGCGGCAGGCCGAGCGCACGGAGCGTCTGCAGGGGGAACTGACCGCCTCACGGCTCGAGCACGCCGCCGACGCAGAGCGCTGGACTCAGAGGAACCTTCTCCTGCACAGAGAGGTCCAGCAGCTCCAGGAGCAGAACGTCCAGCACACACAGCTCCTCGGAGAACTCAGAGAGAAGCTCAGAGAGGCCGAGCACACGCAGCACCTCGCCCAGGAGAAGGTAACAGAGTATGAGGAGTTCCTGAAGAAGCGGGACACAGAGATTAGACTTCTGAACCAGCAGCTGGAGGAGATCCAAGACGAAGTGCAAAAGAGCAGGAACTCGTCCCAGAGTCAGCGTTCTGCGCTGGATATCTTCAAACAGAAATACACCACTGCTATGGAGAAGGTCCAACAACTGCAGGTCCAGATCCAGAGAGCGGAGGAAGAGGCGGAGCTTTCTCAGAAACAGGTTGTCGAGGCTCGAGCAGAAGTTTGCAGTTTAAGAGCTGAAATCTCCAGTCTGGAGTCTCGCTACGAGCAGAAAGCGAGGCAAGCGGAGCTCTCGGAGGAGGCGATGGAGCTGCTCACGGATGAGCTCCAGGCAGCGCTGGACAGCCTGAGGAGCCGAGAGGAGAGAAACCTGCTCCGCGAGGAGGAGATGGACCGTCAGCAAAAACAGGTCGAGAAGGAGGTGGCTCTGGTGAAAGCTGAGCTGCAGAACACACTCCTGACTCTCCAAACCAGAAGTGAAGAGCTGCAGGAGCTCCATGAGGAGATGCGGAAAGTGACTGAAGAGAAGAACCAGACGGAAAAAGAGAACCAGGTCATGAGGAACGAGCTCAAGCATCTGGATCATCAACTTCAGCAGCTCCTCTCCTTCTTCACAGATACAGCTGATACTGTACTCGAGCAGGAAGACAGTGCTGTTTTCTCACCATCATTTCTCAAGAAGACAGAGCAGCAGCTGAGTGACCATCCTGCAGAGAAAGAGGACATCTGTCAACTCACCcggctacaGTCGACTTGCGAGAAGCTTCGAGCCGAGGTCGGCGTTCTTCTGAGATCTCTGCAGAAAGCTGTAGAAGAGGCAGAGATGCAGCAGAGGCTCGTCTGTGAGGTGGCCAGAGAAAGAGACGAGGCCAGAGAGCAGctgcagcagCTGAAACGGAATCTTGAGGAAACCCGGACAGAAAACTCTCACCTCCATCAGGAGAGAGAACAGCTGGTGACCAGCATCAACCTCTGGATCACCGAGCACAAGGCCGCTAACGAGAGTCTGGCTGGACGGATCAAACAGCAGAACGAGCTTTTGACCACCGTCAGTCTGGAGAGAGATCGGCACGCAGACTCAGACGCTCGGTTCCCGGCTGCAGAGACGTTTCGCTGTCCTAACAGATGGATGAATCGCATGTGTTTCCTCCAGCTCCGGAACCAACTAGCCAATAACTTGAACAAAATAGATGACATCCAGTCAAGGCTGAGGTCCAACTTGCAGTCTGTCAAGCTGCTAAATCAACAGctGAGCAGCATGAGGGAGGAGAACAAGAAGAACAGGAAGTTGCtggagaaggagaggaaaaggCACTCACATCTGGAACTGTTGCTGGGCTTGAGGGTCGACCAGAGCTTGGTTCCTCTCCTTTCTCCTCCATCCCTCGAGCCCTCAGACCTGGAGCTTGACCAGATCCAGTCAGTTCGAGAACGGTTCTCGGCGCAGCCCAGGGGAACATGTGAGAAGAGATCAAAGTCTGCTTTACAGTAGTGTCAAGAGTCTTTTCATCTACCAATCATGTTGCCAAGAACCTACAACTTTCACACAGAGAGGTCATACACATGACAGACACTGCAAACGACCAATCAGGACTTGTAGCTCGTTGGCAAACACGCAAGCGTCACACACTTTCCACTAACTACTTCAAACAAAAGCACATTGCTGAGCTCATTGTTGCTTAAAAGCCAGTTGGAAACGTTTAAACACAGGAAAAAACAGGTAGCTAGCCTGTAACTGTTAATGTCCTGATACTCGCAAGCAACGCAATCAGTTTAACTCAGAAGTGGAAAAACACAACTTTATACATAACAAACTACAAAGAGGAACAAAaccatggacgcctccatgaaTGCTTGTCTTTTGAAAGCTTGTCTTTTTCTGTccaaaagctagctagctaatattatcTATAATCTCAAACCAGAAAACTGTACGTCCAGTGTTGAagattaaaccaaaaaaatgtgtctgtatgtttatttatctaaagcaaatacGACTAGAATCTAATGTAAAAGTACagaatgttaatttatttactgtGGAAATGGCGTAATGTGCTAAACTCAGGGTTGAGACTGTTTTCCTGAGTTTCTGAATAGCAATTTTAAGTTGACGGggcatttttgttgttttttcaaaGTCAGACATCAGAAATTCCAAGTAACGAGCTCTTATCAGATGGTTTGTGGGCGGAGCCTCTGAACCTGAGCTCTACATTCATAGTAGTGAGTGACATGATTTCTACAACCAAGTGACATTTAAATTTtctgcaaattaggtatgacttGTTAaggtgacaaatccaaacgattggctcaactgattcctcagaccaatcccaACTCGTGCGTGGTCCGATGTTTCTTCACTTCCTCGCTCACAACTTCCTACCTTGCACTTAGTTCCCATTTAGTGTTTGATgcagaaaaatgaaaggaaaagccATGATTATAACCATGATTTCAGTTTATCCTGTCATTTctgacctctcattaaatgccTATAGAGAtgtgacacaaaaaaaaagcttagaaggaagtagcagagatcatggTGCATCTAGTGAGTgcatgtagctagtacagttagctcgctttgctaatctgctgaCAAAACTAGTATGAAGtgagttatttaattttttaatttgtgttaaacTGGCTAGCATtagaaggggtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396027 lncRNA upstream 68757 18722416 ~ 18747477 (+) False LOC117595806
TU396028 lncRNA upstream 68757 18743018 ~ 18747477 (+) True LOC117595806
TU395987 lncRNA upstream 78056 18678875 ~ 18738178 (+) True G334345
TU396013 lncRNA upstream 89504 18688759 ~ 18726730 (+) True G334371
XR_004576991.1 lncRNA upstream 110141 18705292 ~ 18706093 (+) True LOC117595807
TU396219 lncRNA downstream 1230 18932502 ~ 18932710 (+) True G334573
TU396221 lncRNA downstream 1777 18933049 ~ 18933251 (+) True G334575
TU396394 lncRNA downstream 386585 19317857 ~ 19360737 (+) False dap
TU396400 lncRNA downstream 386585 19317857 ~ 19360737 (+) False dap
TU396406 lncRNA downstream 414617 19345889 ~ 19351752 (+) True G334733
XM_034298299.1 mRNA upstream 27649 18732960 ~ 18788585 (+) True zfhx4
XM_034298302.1 mRNA upstream 83154 18712048 ~ 18733080 (+) False LOC117595806
XM_034298301.1 mRNA upstream 83154 18716310 ~ 18733080 (+) False LOC117595806
XM_034298300.1 mRNA upstream 83154 18716310 ~ 18733080 (+) False LOC117595806
XM_034298303.1 mRNA upstream 83154 18722387 ~ 18733080 (+) False LOC117595806
XM_026937802.2 mRNA downstream 89734 19021006 ~ 19033661 (+) False zc2hc1a
XM_026937801.2 mRNA downstream 89735 19021007 ~ 19033661 (+) True zc2hc1a
XM_026938090.2 mRNA downstream 129617 19060889 ~ 19328125 (+) True ctnnd2a
XM_026938091.2 mRNA downstream 129617 19060889 ~ 19328125 (+) False ctnnd2a
XM_034298152.1 mRNA downstream 129617 19060889 ~ 19328125 (+) False ctnnd2a
TU396015 other upstream 98281 18693149 ~ 18717953 (+) True G334373
trnaa-agc_16 other upstream 436220 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 436860 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576959.1 other upstream 492939 18315360 ~ 18323295 (+) False mtfr1
TU396386 other downstream 407934 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 407934 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 407934 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 407934 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 407934 19339206 ~ 19427936 (+) False dap

Expression Profile