RNA id: XM_026938168.2


Basic Information

Item Value
RNA id XM_026938168.2
length 1953
RNA type mRNA
GC content 0.49
exon number 3
gene id pex2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18808594 ~ 18816074 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACGATTCAAGGCGGGGTTTCTGAGAATGCAACCCGGAAATGGAGCATCAACTATTTCAACGTGTCGATTTTAGACCGTGAGCTTAAAATGGCCGGAGCCAGAGCCGGAAGTGAGAACTCACCGCCTCGCGTCCTTAGAATCAGCCAGCTGGACGCTTTTGAGCTGGACGATGCCCTGGAGCAGCTCGTCTGGTCCCAGTTTGCGCGATGCTTCCAGCATTTCAAACCAGGCCTGCTGACTCGTGTGGAGCCAGAGCTCAAAGCTCTGCTGCAGCTCCTCGTGTGGAGGTTCACCGTGTATTCCAGCAGTGCCACCGTAGGCCAGACGCTGCTCAACATCCGCTACCACAACACGCTCATCGCCGGACAGAAATACAGGTCTCTGAGCAGGCGGCAGAAACTGTGGTTCGCTTTGCTCACGGTGGGCGAGAAGTGGTTGAAGGAACGTTCTCACAGCTTGTTCCTCAGCAACAGTGCGCTTTCGGGCCTCCAGAAAACACGTCAAGCTCTAGCTTTGGTTAGCAGCGCAGTTAAAGTGGCTAGCCTGCTCAACTTTATGCTCTTTCTACAAAGCGGGACATTTCCCACTCTGACGGAGAGGATGCTGGGAGTGCGGCCGGTGTTCGTCCGGGATCAGAGCGCCCGTGAAATCAACTTCCACTACATGAACCGGGAACTGCTGTGGCACGGCTTCGCCGAGTTCCTCATCTTTCTGCTGCCGCTGATCAACGTGTGGAAACTAAAGACCCGTGTGTCTGCGCTGTTCTCCATTTCTGATCATTCAAGCCAGAAATCGGAGTCTGTCGGACGTTCCGAGTGCGGACTATGCGCCGAATGGCCCATCATGCCTCACTCCATCGGGTGCAGCCACGTCTTCTGCTACTACTGCATCAAAAGCCATACGGCTGCCGACGTCTTCTTCACGTGTCCCCAATGCGGTGCTGAGGTCACCACCATACAGCCAGTCAAGTTTCAAATAGAAATGGCGGAAATGCAgcagacatgattttttttccccacaacatGTCATTGACAGTAACCATAATGTGAACTTCTGTTCGAATCCCTAGAGACCAGCTGATGAAAGACTGCAGCTTGTGCCTTTTTGTTGGCATGAAATATGCAAGAAAAGGCCGAGGAAAGACGAACTCGATGATGCTTAGTTTCAAATTAAAACGATTTCTGTCGCTAATTTATTCCTGCTCATTAAAGTTTGATGGGGACTCGAGTATCAGAGGTCCACTTTTCCTCTCCCGCGTTCTCAGACGGCGCAAATGAATAAACATCAAAACAGCTCGAGCGCCTGCACGTTTGCATCTCCAGTGAAGTGTGAAATTTGCACAAGATCAAGGAGAGGCCATGATGGGATGGGAtgtggggagtgtgtgtgtgcgcgtgtgtgtgtggggtgggggtgTTTTGGGTGTACGGATTGACAGACATCCCGGCGTAATCTCCTTGGCCTTCTTAAGACGGCAGTAAACTGTAACCAACCCTAGTAggtctgtgtgcttttttttttataacccaCATTATGCACTAATcctaataataacagcaaagacGGTTATTTATTCTGGCGTTAACCTTCTCCAATGAGCCATGCCTCCAGCAAAATGCACCCAAGTGGGCTCAGGCCTGCTGGAAACTCCCACCTTGTTTTGATCGCATGGCCTTAATTGCTGATTTCGGAGGCAATCAATCACGACTCCAGGCGTGATGGAGCCCATGGTCTGTTTTGTGCATCTTTTGAAATTATTCTCCTGAAGTTTCTTGACAAAGAGAGCGCTGAAGTCTTGCTTTGAGCTTGTTATGCTAATGTGCTATTGCCAAACACTACACTGCAGCCTTTGTTTTCATTCAGGATTAAAAGACGTCCACTGAAATGTCTTCTACTATCATTTACATACATATCCACAAAAACTCCTGcggaataaaagacaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K06664 PEX2, PXMP3; peroxin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396112 lncRNA downstream 18847 18785492 ~ 18789747 (-) True G334467
TU396116 lncRNA downstream 49042 18755870 ~ 18759552 (-) True G334471
TU396115 lncRNA downstream 58681 18749395 ~ 18749913 (-) True G334470
TU396072 lncRNA downstream 223359 18584763 ~ 18585235 (-) True G334427
TU396071 lncRNA downstream 224282 18583602 ~ 18584312 (-) True G334426
TU396216 lncRNA upstream 113905 18929979 ~ 18930439 (-) True G334570
TU396220 lncRNA upstream 116555 18932629 ~ 18932840 (-) True G334574
TU396248 lncRNA upstream 144773 18960847 ~ 18961053 (-) True G334602
TU396268 lncRNA upstream 189448 19005522 ~ 19015784 (-) False pkia
XR_004576971.1 lncRNA upstream 254264 19070338 ~ 19075266 (-) True LOC117595792
XM_026937841.2 mRNA downstream 306512 18496163 ~ 18502082 (-) False cops5
XM_026937840.2 mRNA downstream 306537 18496163 ~ 18502057 (-) True cops5
XM_034298212.1 mRNA downstream 318013 18483387 ~ 18490581 (-) False ppp1r42
XM_026938172.2 mRNA downstream 318013 18483387 ~ 18490581 (-) True ppp1r42
XM_026938173.2 mRNA downstream 326194 18479679 ~ 18482400 (-) True LOC113541285
XM_026938262.2 mRNA upstream 189424 19005498 ~ 19008927 (-) False pkia
XM_026938261.2 mRNA upstream 189424 19005498 ~ 19008927 (-) False pkia
XM_026938260.2 mRNA upstream 189425 19005499 ~ 19015855 (-) False pkia
XM_034297799.1 mRNA upstream 189425 19005499 ~ 19008689 (-) True pkia
XM_026937911.2 mRNA upstream 547325 19363399 ~ 19377873 (-) True ankrd33ba
TU395862 other downstream 288389 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 365599 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 428860 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 429473 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 881759 17925075 ~ 17926835 (-) False zmp:0000000991
TU396861 other upstream 760034 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 784653 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 1363338 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 1426446 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 1430492 20246566 ~ 20248461 (-) False otos

Expression Profile