RNA id: XM_026938172.2


Basic Information

Item Value
RNA id XM_026938172.2
length 2083
RNA type mRNA
GC content 0.40
exon number 9
gene id ppp1r42
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18483387 ~ 18490581 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCCGTAAACAACGCGGTTCGCTCTGGGTGAAAATGAACTAACTCCTAAAGGAtttgtgttgttattattaaggGCTGTAAACGTTCTGCTTATACAAACGGCGAATTAAAGATCGAGAAACCCACTAAAACTCCCAGCTGCCATGGTTCGCTTGACTGTAGATCTGATTGCCAGATCTAACAATCGCCTTAAAACCAAAAGAAATTTCTCCATCCAACATTTTCTCAAGAAATTAACACATCTCAACTTTTCAAACAGGAACATCGATGATATCGATGACCTTTCCATGTGCAGAAACCTCACAGTTCTCTACTTGTATGATAATCAAATTACACACATCTGCAACCTGAATTTTGCTTCCAATCTCACGCACTTGTACATGCAGAACAACAAAATCACTCACATAGAGAACTTGTCATGTTTGCAGAAGCTCTCCAAATTgTTTCTGGGGGGCAACAGCATTACGCTGGTCGAGGGTTTGGAGCAATTGAGAGAGCTGAAGGAGCTGCACATCGAAGGCCAGAGACTCCCACCAGGAGAGAAGCTGCTCTTTGACCCTCGTACTGTCCACAGCCTGTCGGAGTCGTTATGTGTTTTgaatattaacaacaacaacattgaTGAGATACAGGATCTGGCTGTTCTTAACAAACTGACACATTTATATGCTGCAGACAACCAGCTAGAGGACATACAGGAATTGGAGACGGTGTTTAGCCAGTGGCCTCAACTGCATCGAATGGATTTGCGTGGAAATCCTGTCTGTCATAAACCCAAATACAGAGACAGACTAATAACTGTTTGCAAAATGCTGGAGGAACTTGATGGGAAGGAGATATCTGAGTTGTCTAGGCAGTTCTTAATCAACTGGAAAGCCTCAAAAGATGCCAAGAAGAAAATAACAGATGGTAGAGACATGACAGGACAAATCACATATCCCTTTTCTGCTGACTTTCACTTGGGCCCCCAACATCCCTTTGCCTATAACTCTGCTGGCTTTCTGGGGAAGAGGAAGCCGCTCTGGTTTGGGAGACCCACCATGAAAATGAGGTCAGGCGCAGTGCGGACAGACTGCGGAGACATAAGTATGAAGAATCATGAAGACCCCCTGAGCGTAGGACTAATTACAGATATTCAAGAGACGAAAGTTCAGAGTCACATGCCTCTCTGAGCATCCTCGAGAAGAAACTTTGGGGACCTCTTAGACGTTTCCCATGGCCTGCACCCTGCACAGAGACAGTTCATCACGAGTGCATGTGGAATGGATCTGAGCGCTCACAAAAAGATCAAGTCCACAGTAATTGTCTGTCATAACGTCAGAATGCCACTTTCAGAGCTGTAGCACACTGACAGCAAGCACTCCGAGTCACATTTCGTTCTGTGCACTCACACTGCCTCTGTCTTCGATCAGTTTATTGACAGCTATTTGATCAAACGATGCCTGTAAGAATTTGTTTTTATCACATTCCAGTGAGCTTTATCTTAAAGCCtcattagattttattttaataagtttACTATTTGTTGAACATCAGGTCTTCCTGTTATTTACAGTATGAGACAGtgtttgcattaaaatatatCCTTAACCTTAGGTCTTTTCTCTGTGCTTTGTGTCTTTAAGTGAAACTTGACATATGTACACGCTTCTACGTTCAAACTGACAGCCATTTTAGAGTTTTCCTAATATTTCCTAATATTCAAAAATTAGTTCTTATATaatttgttttacattattattggCATCAAGATTATTTTGCAACCTTGTAAAATTTGCAAAACACATTGCTGCTGTGTAACTGTGTACAAAATCCTAAGTGATAACTCTCAGGcctaattttatttgtaatgtgcAACACATTAAACAGAATTATTAGTGAAATAGTGAAATATGTCAAATATGTGAATCAAAcaattttgccttttttttaaaatgacttcctattttcctttttatgtGGAGCCATTTTATCACTCAAATAATGCTACTAAAGATATTCACTGTAGAATAATGAAGAATATATGTCGATCAGATGCCTTTCATTTGGTCACTGTACCCTGCAATAAACCCCATGCTGTAA

Function

GO:

id name namespace
GO:0005813 centrosome cellular_component
GO:0002177 manchette cellular_component
GO:0005737 cytoplasm cellular_component
GO:0015631 tubulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K17579 PPP1R42, LRRC67; protein phosphatase 1 regulatory subunit 42

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404163.2 lncRNA downstream 4594 18474666 ~ 18478793 (-) True LOC113541286
XR_003404164.2 lncRNA downstream 4604 18474666 ~ 18478783 (-) False LOC113541286
TU395888 lncRNA downstream 4629 18474680 ~ 18478758 (-) False LOC113541286
TU395889 lncRNA downstream 4629 18474680 ~ 18478758 (-) False LOC113541286
TU395890 lncRNA downstream 4629 18474680 ~ 18478758 (-) False LOC113541286
TU396070 lncRNA upstream 91892 18582473 ~ 18583025 (-) True G334425
TU396071 lncRNA upstream 93021 18583602 ~ 18584312 (-) True G334426
TU396072 lncRNA upstream 94182 18584763 ~ 18585235 (-) True G334427
TU396115 lncRNA upstream 258814 18749395 ~ 18749913 (-) True G334470
TU396116 lncRNA upstream 265289 18755870 ~ 18759552 (-) True G334471
XM_026938173.2 mRNA downstream 987 18479679 ~ 18482400 (-) True LOC113541285
XM_034298307.1 mRNA downstream 34160 18437514 ~ 18449227 (-) False mybl1
XM_026938290.2 mRNA downstream 34160 18437514 ~ 18449227 (-) True mybl1
XM_026938226.2 mRNA downstream 90409 18391371 ~ 18392978 (-) True crhb
XM_026938219.2 mRNA downstream 137231 18326095 ~ 18346156 (-) False pde7a
XM_026937841.2 mRNA upstream 5582 18496163 ~ 18502082 (-) False cops5
XM_026937840.2 mRNA upstream 5582 18496163 ~ 18502057 (-) True cops5
XM_026938168.2 mRNA upstream 318013 18808594 ~ 18816074 (-) True pex2
XM_026938262.2 mRNA upstream 514917 19005498 ~ 19008927 (-) False pkia
XM_026938261.2 mRNA upstream 514917 19005498 ~ 19008927 (-) False pkia
TU395863 other downstream 40392 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 103653 18379649 ~ 18379734 (-) True trnay-gua_4
trnay-gua_3 other downstream 104266 18379036 ~ 18379121 (-) True trnay-gua_3
TU395529 other downstream 556552 17925075 ~ 17926835 (-) False zmp:0000000991
XR_004576970.1 other downstream 566831 17909938 ~ 17916556 (-) False c22h11orf65
TU396861 other upstream 1085527 19576108 ~ 19578920 (-) False nup58
TU396884 other upstream 1110146 19600727 ~ 19603693 (-) True G335165
TU397303 other upstream 1688831 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 1751939 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 1755985 20246566 ~ 20248461 (-) False otos

Expression Profile