RNA id: XM_026938176.2


Basic Information

Item Value
RNA id XM_026938176.2
length 1557
RNA type mRNA
GC content 0.49
exon number 10
gene id hnf4g
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18530475 ~ 18542760 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGCTTTGCCCTGAGTTTTTTATCCTGAGGACACTCAACATGACTAACTGCTTTAAAAAACTCTCCCATTTTCCCTTTGTGAGAAAGATAGCAAAATAGCTCATTTAGATTCAGTGCTATCAATGAAAAGTCGTGTAAGGACGGATAAAAGAAAGCATGCCAACAGAGTCCAGCATCAGCCATGGGGATAATGGCGTAATCTCCAACTGTGCCATCTGTGGGGACAAGGCCACGGGCAAGCACTACGGCGCCTCCAGCTGTGACGGCTGCAAGGGCTTTTTCCGCAGGAGCATCAGGAAGAGCCACGTCTACTCATGCAGGTTCAGTCGCCAGTGTGTCATCGACAAAGACAAGAGGAATCAGTGCCGCTTCTGTAGGCTTCACAAATGCTTCCGAGCTGGAATGAAGAAAGAAGCTGTGCAGAATGAACGGGATCGTATCAGCTCCAGGAGAAGCACACCAGACTCCCATGACCTTCCACCTATCACTGTGCTGGCGCAGGCAGAGTCCCTTTCACAACAGATCAGCGTCGCCAGTCCGACGGGCTCCGCTGATATCTCTGAGAAGAAATCAGCCACCGTTGGGGACGTGTGCGAGTCTATGAAGCAACAGCTGCTTGTTCTGGTAGAGTGGGCTAAATACATCCCGGCCTTCGGCGAATTGCCTCTTGACGACCAGGTCAGTTTATTACGAGCACATGCAGGAGAACATCTTCTGCTCGGAGTAGCCAAGCGGTCAATGCCATACAAAGATGTCCTGCTGCTCGGTAATGGCTGTGTTATTCACCGAAATTGCCCCGAGGCAGAGATCAGCCGAGTGGCTAACCGCGTCCTCGACGAATTGGTCTCACCCTTCCAAGACATACAGATTGATGACAATGAATATGCAGCTCTGAAAgccattgttttttttgacCCTGATGCCAAAAGCCTCAGAGATCCCTCGAAGATAAAAAGCATGAGGTACCAGGTTCAGATGAGTCTTGAAGACTACATTAATGACCGTCAGTATGATTCTCGTGGACGCTTTGgcgagctgctgctgcttctcccTACCCTGCAGAGCATCACCTGGCAGATGATCGAGCAGCTCCAGTTCATCAAACTCTTTGGCCTGGCCAAGATTGACAACCTGCTGCAAGAGATGCTGCTAGGAGGTCTGACCACAGAGCAGCCTTACTTGCACCATCATAGCCACCCCCAGCTCGCCCAGGATCCAATCACGGGCCAGACGTTAGTCATCAGCTCCATTTCAGGCCCTCTGCATGCCCAGCAAATAGCTTCTCCAGACACCCCGATCCCATCTCCTCCTCAGACTCAGAGCCAGGAGATCTATAAGGCCTCCTCTAGTCCTACACTCTTAATGCCGTCACAGCCCATCTCCAACAGACCCTCACCTGAGCCACCACTCTGAGGAATAAAAAGGCATCCTTGCATCATTAATAACTGTATTTGAGTGGAGCTGTATGccctgtgtgtttgtaaatgtgtaaatagtatgagatgattaaaaaaaaaaaaaaaaaaaaagcatattattaaaaatctttGAGACCA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08037 NR2A2, HNF4G; hepatocyte nuclear factor 4-gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395842 lncRNA upstream 51736 18474684 ~ 18478739 (+) False mcmdc2
TU395831 lncRNA upstream 89819 18440255 ~ 18440656 (+) True G334211
TU395830 lncRNA upstream 91029 18439149 ~ 18439446 (+) True G334210
TU395829 lncRNA upstream 93069 18435721 ~ 18437406 (+) True G334209
TU395714 lncRNA upstream 205651 18302862 ~ 18324824 (+) False G334120
TU395933 lncRNA downstream 602 18543362 ~ 18581969 (+) False LOC113541128
XR_003404150.2 lncRNA downstream 630 18543390 ~ 18681823 (+) False LOC113541128
XR_004576990.1 lncRNA downstream 630 18543390 ~ 18680498 (+) False LOC113541128
XR_004576989.1 lncRNA downstream 630 18543390 ~ 18584755 (+) True LOC113541128
TU395987 lncRNA downstream 136115 18678875 ~ 18738178 (+) True G334345
XM_034298018.1 mRNA upstream 2780 18523154 ~ 18527695 (+) False LOC113541230
XM_026938096.2 mRNA upstream 2780 18523279 ~ 18527695 (+) True LOC113541230
XM_026938095.2 mRNA upstream 7181 18503818 ~ 18523294 (+) True pign
XM_034298211.1 mRNA upstream 44466 18468022 ~ 18486009 (+) True mcmdc2
XM_034298210.1 mRNA upstream 55816 18467878 ~ 18474659 (+) False mcmdc2
XM_034298302.1 mRNA downstream 169288 18712048 ~ 18733080 (+) False LOC117595806
XM_034298301.1 mRNA downstream 173550 18716310 ~ 18733080 (+) False LOC117595806
XM_034298300.1 mRNA downstream 173550 18716310 ~ 18733080 (+) False LOC117595806
XM_034298303.1 mRNA downstream 179627 18722387 ~ 18733080 (+) False LOC117595806
XM_034298299.1 mRNA downstream 190200 18732960 ~ 18788585 (+) True zfhx4
trnaa-agc_16 other upstream 150461 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 151101 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576962.1 other upstream 207180 18315358 ~ 18323295 (+) False mtfr1
TU396015 other downstream 150389 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 796446 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 796446 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 796446 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 796446 19339206 ~ 19360737 (+) False dap

Expression Profile