Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026938177.2 |
| length | 1274 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 9 |
| gene id | hnf4g |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047616.1 |
| NCBI id | CM018562.1 |
| chromosome length | 21037487 |
| location | 18530475 ~ 18542760 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043401 | steroid hormone mediated signaling pathway | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU395840 | lncRNA | upstream | 3374 | 18500783 ~ 18530907 (+) | True | G334219 |
| TU395839 | lncRNA | upstream | 3374 | 18501508 ~ 18530907 (+) | False | G334219 |
| TU395842 | lncRNA | upstream | 55542 | 18474684 ~ 18478739 (+) | False | mcmdc2 |
| TU395831 | lncRNA | upstream | 93625 | 18440255 ~ 18440656 (+) | True | G334211 |
| TU395830 | lncRNA | upstream | 94835 | 18439149 ~ 18439446 (+) | True | G334210 |
| TU395933 | lncRNA | downstream | 1006 | 18543362 ~ 18581969 (+) | False | LOC113541128 |
| XR_003404150.2 | lncRNA | downstream | 1034 | 18543390 ~ 18681823 (+) | False | LOC113541128 |
| XR_004576990.1 | lncRNA | downstream | 1034 | 18543390 ~ 18680498 (+) | False | LOC113541128 |
| XR_004576989.1 | lncRNA | downstream | 1034 | 18543390 ~ 18584755 (+) | True | LOC113541128 |
| TU395987 | lncRNA | downstream | 136519 | 18678875 ~ 18738178 (+) | True | G334345 |
| XM_034298018.1 | mRNA | upstream | 6586 | 18523154 ~ 18527695 (+) | False | LOC113541230 |
| XM_026938096.2 | mRNA | upstream | 6586 | 18523279 ~ 18527695 (+) | True | LOC113541230 |
| XM_026938095.2 | mRNA | upstream | 10987 | 18503818 ~ 18523294 (+) | True | pign |
| XM_034298209.1 | mRNA | upstream | 59622 | 18468026 ~ 18474659 (+) | False | mcmdc2 |
| XM_034298208.1 | mRNA | upstream | 59624 | 18468022 ~ 18474657 (+) | False | mcmdc2 |
| XM_034298302.1 | mRNA | downstream | 169692 | 18712048 ~ 18733080 (+) | False | LOC117595806 |
| XM_034298301.1 | mRNA | downstream | 173954 | 18716310 ~ 18733080 (+) | False | LOC117595806 |
| XM_034298300.1 | mRNA | downstream | 173954 | 18716310 ~ 18733080 (+) | False | LOC117595806 |
| XM_034298303.1 | mRNA | downstream | 180031 | 18722387 ~ 18733080 (+) | False | LOC117595806 |
| XM_034298299.1 | mRNA | downstream | 190604 | 18732960 ~ 18788585 (+) | True | zfhx4 |
| trnaa-agc_16 | other | upstream | 154267 | 18379942 ~ 18380014 (+) | True | trnaa-agc_16 |
| trnaa-agc_15 | other | upstream | 154907 | 18379302 ~ 18379374 (+) | True | trnaa-agc_15 |
| XR_004576962.1 | other | upstream | 210986 | 18315358 ~ 18323295 (+) | False | mtfr1 |
| TU396015 | other | downstream | 150793 | 18693149 ~ 18717953 (+) | True | G334373 |
| TU396386 | other | downstream | 796850 | 19339206 ~ 19360737 (+) | False | dap |
| TU396388 | other | downstream | 796850 | 19339206 ~ 19427936 (+) | False | dap |
| TU396389 | other | downstream | 796850 | 19339206 ~ 19360737 (+) | False | dap |
| TU396390 | other | downstream | 796850 | 19339206 ~ 19360737 (+) | False | dap |
