RNA id: XM_026938180.2


Basic Information

Item Value
RNA id XM_026938180.2
length 4599
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC113541290
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14217138 ~ 14223311 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGcagagtgtatcgttacaccctgTTCAAAGTTGATTTGTTCTCAGTAGAAAGGGTGAAACCtgaaccaatctggcaacccagagaggaaggagaaaaaCAGCAAAGCCACCAAGAAAGGAAGAAACGACATAGAGACTTTACTTCAACTTAGCCTGGCTAAATTATTACCTGTTTATATAGACGTTATAAACGGTGAGAGAAGCGCTATAACGTCTGGTTCACACGTATTACCGCTAACATATCAGTCCATAATGCAAACGCACTGAAAGCGCTGTGTGATAATTCGACTGAAACAGAGTTATacatattagctagctaagttagcgAGATAGCATAGAAGTTAGCGTTTTAGCTAACAGCCCTTTCCTATCTGCCTGACTTAAGTCGTTTAAAATTCGTAAAAGAAAATACAACGAAGCTGGATTTTACTCTGAAGACTCCAGAAatgACGAGGTTAACTGTGCAGTGATTAGCATTTCCCAGTCACATGGAAGGATAGTAACCGTCGGCTATCACCTCCCATGCCGTGGAAACGTCAGGATGAAGAAGACGTTTAGCCTTAAGACGTTCCGAAAGTCGTTCAACATCAAGGGCAAAGAGGATGGAGATTTTGTGATGCTCCAAAAGCCGTCGTTGGCCCCCGAGTTCACAAAAGACGACTCTCTTTTTGGAAGTTGTTACGCCAAAGAGCTAACTTGTGACCTCCATGGTGAGGACGCAAGGGCCCACAAGAACAGATCCAAGAGTGAAAGTCTTATGGGGACCTTAAAAAGGAGACTTTCTTCCAAGCAGAAACCTAAAAGTAAAGGAGGGTCAGCCTCAGTGGGCTTGGGAGATGATGACGATACGTTCTCATCCTCTTCAGTCCCCATAAGCTTTAATGAAGCCAAAGCCCAGCGCCCTTTAAGATCAGCTTCCCTGCGGAGTCATCACTACAGCCCTTCCCCTTGGCCCATAAGAACCGTTGACCCTGAGGAAGCCTGTATTAAGATGGAGGTGAAGGTAAAAGCCATGGTTCACACACCTAGCTCCAGTCCATCCCTTAATGGTGTTCGAAAAGAGTTCCATGACATCCAAATGGAGGGACTTTTTGACGATCGAAGCGACTCTATGAAGAATTTAGAGCCTCCAAACAGTGACTTGCATTTAAACATGGAAGCACACATGCCTGTAGTTATTGGACTGACACCTCAGGACTACATCCAGTACACAATGCCTTTAGATGAGGGAATGTACCCCGAATCGTCCCACTCTTTGTGCTTGGATGGCACCTCACCCATAGAGGTGATGGAACAAGTCAATGACGAATCGTTGAATGTGGATCAAGGCCATGTTGACCATGATCTTTTAACTTCGGATATTCTCATGGATCAATCCATGAATGGGATTGTACTTGGTACTCCGGGACTAGTCCTTCAAAATTCAGGATCCGAGGCTCCTTCACTTTCGCCTTCGCTTTCCCCTGTTTCTGGTGGTGAAATTCCAAGAACCTATTCCGGATTTGGTGGTGCTGATTCACACGTTGCAGAAAGAGTGAGGCACCATCTCAATTTTGACCCAAATTTTGCTCCTGGTGTCAGCAGGGTATATGATTCAGTACAAAGCAGTGGACCAATGGTTGTCACGAGCCTTACAGAAGAGCTGAAGAAACTGGCTAAGCAGGGTTGGTACTGGGGACCTATAACGCGATGGGAAGCTGAGGACAAACTCATCGACCTTCCGGATGGTTCTTTTTTGGTGCGTGATAGCTCAGACGACCGCTATCTTCTCAGTTTGAGCTTTCGATCGCAAGGCAAGACTCTTCACACTAGGATCGAACATTCGAACGGAAGGTTCAGCTTTTACGAACAGCCCGATGTAGAAGGTCACACGTCCATCGTCGACCTCATCGAGCACTCCATTAAGGACTCTGAAAACGGTGCGTTCTGTTACTCCAGATCGCGCCAGCCAGGATCTGCGACGTACCCGGTTCGATTGACCAATCCCGTATCTCGTTTCATGCAAGTGCGTTCGCTGCAGTACTTGTGCCGATTCGTTATTCGACAATACACACGGATTGACCTGATTCAGAAACTACCTTTACCGAACAAAATGAAAGATTACTTGCAGGAAAAGCACTACTGAACTGGGATACAGTAGTAAAATTGCACTTTTGGATCAAGTTGATGTTAAATGGTTTACAAACATTTTGTGGAGTTCAAGTGATCCGTTAAGTTTGTTTTGTATCAAAAGCATTAGTTTATCTCATCTTGGTAAATTTGTTGTTGCTCAGATTCACTATAAAGGTACACTTTCATTTTTGATCTACTGGGGAACCTGACAGTAGAATTCTACTCAAAAATGTGTGACGAACAGTAGTCACTACTTCCCTTCCGAATCCTTGAAACTAATAGTTTTGATTTACGCTGCTCTTACAACATATATAACATAACTTAGTGTTAGttcattaaaggaaaagtccaccctgaaattcattaaatgtgtttatattgaaatatttgtgaagtATCTGGCACTTCTGGTGCAAATTATTTGATTGGTGTTGTTTTTTCATTATGTTTGTACATTGatagtgcagttacaatggtgtttaataggagaaaaaactAAACAATCTCAGCCATAAGGGATAACAGACAGGATTTGCTGTTTGTGGCCAAAAAAGTGCAagagtttcttttctcactcaccagtTCCCAGTGACGTAAGGAAGCAGTGGTCTCAGAATCAGCTCATCTAGTTAGTGATCTAGGATGTGATGAGCACGATGACACTTTCGGCAGTaatagcatgaaagttgaagtttTGGAAGCTtagacagactaaaggactaaatcCTACCGTACTACTGTCAGCAGGGAgtcgaacagcattgtgggtagtGTATGAAACTGTTAGCCAAAGTGAACATAGGCcagtgaaagaagtttaaacaaaaaaaagtcaactcagaatttcattccAAAATAAGTCTTGGACATCATAAAAATGAACATGCGcattgttcagggtggatttttcttttaagggTCGGTGATGCTGATCAAGTCAAAATAAGCTCAAGAATCAGGAAACGCTAGACATGACAGTCCAATGTCAGATCAGAATATTAACCAGGCTTAGAAATCTatgcttaattatttaattggCATTCATATCACACTATTTGCTCGAGGTCTGTTAATACATATCAGTGCAAGGTCAAGAGGATTGATTGGTGCAGTAACAGATGCTAAAACAGTCTCAGTGATGCTCAGCTTTATATTTTGATGTACTAGTTTTTGTAATATCTCTTCTCTAATTTCATGTgaaatgacaatttttaaaTTGACATTGGTACTTTCACTTAGATTAATTGAGCAGATTAATTAAATCGCTGTCCAAATGTAATACCATGGATTCAGTCAGAGGTTGACGaatagcttttatttaaaattcagatTTCGTGGTGATTTGGCCATAAGGTGCTTGTCTTATAGATGTTTGATTAAATTGAGTATGATATGTTCCTTGCTCCTGCCTAAGTAGTTTGTAACCCGCAAAATGGTTTCTTGTGAAATAGAATTGAGCGTGGTGCATTTTGAACTGAAGTAACCTTTTCCgtttatcatatttttatattcactttTACATTATTGTCCAGTTTAACAGTCAAGAACCAAGACCAGACGGCCTTCCATCATCTCAATTTCTGTTTACCTTGTTCAGGACTAACAATAATAAAGGCGATAATAATGCATCTTCAGTGGCAGCTATAGATAAACTTTTGTAAATGGCTGAATTTAGCGTCCGATTTAGTTACCTCTGATTATTTGCGCAGAAACAAGACTGCACCTGATGCTCAGGTTCCTTGATTAGCACATACATACAATTTTCCAAATCTCTGCAACaacaaattaacattttataccACTGCAAATGAAAATTTGTATTAGGCATGCGCCGATAATCAGTTATATATTATAGCAAGATATTCACCTAACTCGTTTCTCTTACCATGGACACAAAATATCATTAGTAACCCTGTGTTCCTTTCAGGTAGAGGCTGCCTAGGGAGTCAGCATAAAGTCTGCCTTGCTTGAAAGGCTTTATTTTAGACAGATTTGAAGGCAATCCTGTAGATCCGTTAATGAGATTTTAGAAAGTGATGGCAGGCAGAACTGTAGCTCtgcctttttctttaaaatcatttaatcattcagttatcatgttagaaaaatgcaatatcggcacatgccttaacaaatgttttgtcatacagtatatccaaCATGCAGGTCAAACAAACATGCCAAGGATCTCGTTGTGTTCAAAGGGAACAGATGAAGAATGCTGTTTTTTATGTTTCTATGTGTGATATTTGTGCTTCCTACAGTATTTCATCAAATTGTTTATCACTATCAATGTTGTGTTTTAACATCTCGGTTTTTCTCCAAACGTATCGACTTAATATAAAGAGCGGTTGCTGAATAGAAATCGATGGATTAATTACTTTTGTTGGGAGAAATGATTGTGAAACGTGGGTGAGTGACGTCATTCACGAGCACAGCTTTATGAAGATGTGTTACTTCATTTGCGAATAAAGTCAGTGACTGAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0040008 regulation of growth biological_process

KEGG:

id description
K04699 SOCS6_7; suppressor of cytokine signaling 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392965 lncRNA downstream 457848 13758929 ~ 13759290 (-) False LOC113541105
TU392679 lncRNA downstream 803327 13412902 ~ 13413811 (-) True G331569
TU392678 lncRNA downstream 809680 13406386 ~ 13407458 (-) True G331568
TU392674 lncRNA downstream 834703 13380609 ~ 13382435 (-) True G331565
TU392669 lncRNA downstream 869281 13343614 ~ 13347857 (-) True G331560
TU393198 lncRNA upstream 243083 14466394 ~ 14466613 (-) True G332056
TU393340 lncRNA upstream 290424 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA upstream 294328 14517639 ~ 14521648 (-) False G332169
TU393312 lncRNA upstream 313941 14537252 ~ 14564704 (-) True G332147
TU393330 lncRNA upstream 320721 14544032 ~ 14634926 (-) True G332164
XM_026938271.2 mRNA downstream 248786 13955400 ~ 13968352 (-) False fbxo15
XM_026938268.2 mRNA downstream 248790 13954557 ~ 13968348 (-) True fbxo15
XM_026938270.2 mRNA downstream 253195 13954557 ~ 13963943 (-) False fbxo15
XM_026937887.2 mRNA downstream 349991 13765859 ~ 13867147 (-) True neto1l
XM_026937896.2 mRNA downstream 454523 13757658 ~ 13762615 (-) True LOC113541105
XM_026938151.2 mRNA upstream 89771 14313082 ~ 14373453 (-) False dok6
XM_026938150.2 mRNA upstream 89771 14313082 ~ 14373453 (-) True dok6
XM_026938127.2 mRNA upstream 196583 14419894 ~ 14429370 (-) False pi15a
XM_026938126.2 mRNA upstream 196583 14419894 ~ 14429370 (-) False pi15a
XM_026938125.2 mRNA upstream 196583 14419894 ~ 14429370 (-) True pi15a
TU392350 other downstream 1539205 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1539205 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 3133987 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 3286363 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 3693875 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 713575 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 742502 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 2607385 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 2607385 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 2892787 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile