RNA id: XM_026938187.2


Basic Information

Item Value
RNA id XM_026938187.2
length 6692
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC113541299
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15777021 ~ 15899598 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAGGACAGAAAGCTGATGCGCTGTTATGTTATGGTTTGAGTTCTCGCGATAAATTCTCGCGTTAATTTCTCGCGTTAAAAAACAGTTATAAGGAGGTGAGACGGAGAGACGGAGCGCGAGCTGATGCGTAAatcttctgctttttcttttcttttccgtGGTGCAAAATTTCCGAGTGGAGACTCTGCTGTGGAGTCCGGATAGAAACATCAGGACCAGCCAGCacttcagtagtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagcagggctGAAGGAGTGTGTTGGAGGATGGAGAGGAAGATCAGGATGGTGCACTCAGGATGCATCCGGCTGCTCTGGATcttcagcatcagcatcagcatcagagCTCACTCTGCTTCTCCATCCACCCAGAAATGTGATGAAGCGCTGGCCACGCCCCTTTCCCATAGTGCCTTCAGCAgctcgtctgtgttcaccacCGGCTACACTCCTGAATACGCCAAACTGAACAGGAGAGGAGGtgctggaggatggtctcctcTCGACACTGATCATTCCCCGTGGCTGCAGGTGGACCTGGGCAGCAGGAAGCAGGTGACTGCCATCGCCACTCAGGGTCGATACAGCAGCTCGGACTGGACCACACGCTACCGACTGCTCTACAGCGACACGGGCAGGAACTGGAAACCCTACCATCAGGACGGAAACATCTGGGCATTTACAGGAAACTCCAACACGGAAAGTGTGGTGCGTTATGACCTTCAGCACATTATTGTGGCCCGATTTCTACGATTCATCCCTCTGGATTGGAGTGAAGAAGGCCGGATAGGCCTGAGGATAGAGATCTATGGCTGCTTATACTGGGCCGATGTGATTAACTTTGATGGCCAGGGCGTGATCTCCTACCGTTTcaagatgaagaagatgaagatccTGAAGGATGTGATAGCGCTGAAGTTTAAGACGGGTGAGAGTGATGGGGTGATTCTGCATGGCGAGGGTCAGCAGGGTGATTACATCACGCTGGAGCTGAGGAGAGGAAGACTGCTGCTCCAGATAAACCTGGGCAGCAACCAGTACGGCTCCATCCTGGGTCACACGTCGGTGAGCAGCGGCAGCCTTCTGGACGATCATCACTGGCACTCGGTGGTGATTGAGCGCCACAGGAGAAACGTCAACTTCACCTTGGATCAGAACACGCAGCACTTTCGCACCAACGGAGAGTTTGACCACCTCGACCTCGATTATGAGTTGAGTTTTGGAGGAATGCCGTACTCAGGAAAACTCATCTCAGGAGGCAGGAGAAATTTCAAAGGATGCATGGAGAGCATCAGCTATAATGGAGAAAACATCACCGACCTGGccagaagaaagaaagtggaCACGTCCAGCTTTCGTAATTTGACATTCTCCTGTGTGGAATCTCACACCTTCCCGGTTTCCTTCAACGGCACGAGTTTCCTGCAGCTGCCAGGTAGAAGGGAGCACAACATGGTGTCTGTGAGCTTCCAGTTTCGCACGTGGAACTCTAACGGCCTGCTCCTGTTCAGCGCGCTGGCTGACGGCATGCTGGAGCTCACGCTGAAAGACGGCAAAGTCACTGCGCACATAAGCATCAcgcagcagaagaacttgggtGTAGACATGGTGTCAGGTTCAGGGCTGAATGATGGAGAATGGCATGAAGTTCGCTTCATGGCCAAAGAAAACTTCGCCATGCTAACTATCGACGGAGATGAAGCCTCCGCTGTGAGGACCAACACACCCATTCAGATCACAACTGGAGGAACATACCACTTTGGAGGTTATTTCCTGCAGACCCAGGCGTCTCCATCACAGCGCTCGTTTCAGGGCTGCATGCAGCTCATCCAGGTGGACGATCAGCTAGCTGACCTGGCAGCTGTGGAGCAGGGCATGCTGGGAGCTTTCGAGAATGTCAGCTTGGACACGTGTGCCATCATAGACAGGTGCTTGCCTAATCACTGTGAGCATGGAGGAAGGTGCACTCAGACTTGGGACAGTTTCAGCTGCTATTGCGATAGCACTGGATACACCGGAGCCACCTGCCACACATCTGTCTATGAGCAGTCATGTGAGGCTTATAAGCACATGGGGAAATCTTCAGACGTCTACTGGATCGATCCTGATGGCAGCGGACCTTTAGGGCCATTCAGAGTCATTTGCAAAATGACAGAGGACAAGGTGTGGACGACGGTGGTCAACAACCTGCCAGTGCAGACAGCCGTATCAGGTTCGAGCAGGGAGAGACGCACTGTACTACAGCTGAACTACAGCGCCACCATGGAGCAGATCGGCGCCATTACCGACGCTGCCGAGCACTGCGAGCAGCACATCACCTACACCTGCCGCTCATCACGTCTACTCAACACTCCAGATGGGACTCCGTACACCTGGTGGGTTGGCAGAGGGAATGAGAAACACCTCTACTGGGGCGGCTCTACGCCAGGGGTCCAGAAATGTTCCTGTGGCATCGAGCACAACTGCATCGACCCCAAACACCACTGCAACTGTGACGCAGATCAGAAACAGTGGAGAGAGGATTCAGGGCTTCTTGTCTATAAGGATCACTTACCCGTGAGCGAGGTAGCTGTAGGCGACACAAATCGACCTGGATCAGAGGCCAAGCTCACGGTGGGACCCCTGCACTGTCACGGAGACCGTAGTTACTGGAACGCTGCTTCTTTCAACACGCCATCCTCCTACCTGCACTTCTCCACTTTCCATGCTGAAACAAGTGCTGATATCTCCTTTTACTTCAAGACCTCTGCACCTCACGGGGTTTTCCTGGAGAACCTTGGCAACACAGACTTCATCCGGCTGGAGCTGAAATCGCCCAATGTCGTTACCTTCTCCTTCGATGTGGGGAACGGGCCGGTGGAGCTGAATGTTCACTCATCAACACCGCTAAACGACGACCAGTGGCATCGAGTCAGTGCCGAGAGAAACGTCAAAGAGGCCGTGCTTCAGCTGGATCAGCAATACAGACAGGTTCGAGCTGCACCTGCACAGGGACACACACGCCTGGAGCTCTACAGCCAGCTGTATGTGGGTGCAGCAGGAGGACAGAGAGGCTTCCTCGGATGCATCCGCTCCCTGAAGATGAACGGTGTGACCCTAGACCTGGAAGAAAGAGCAAAGGTCACTCCTGGAGTTAAACCCGGATGTTCGGGTCATTGCACCAGTTTCGGGATGTACTGCCGCAACGGAGGGAAGTGTGTAGAGAAATACAACGGCTACTCGTGTGACTGCAGCAACACGGCTTATGACGGACCCTTCTGCACTAAAGaTGTGGGAGCTTTCTTCGAGGCAGGAACGCTGGTCCGTTATAACCTGGTCCCGGAAGTGAGTTCCGCGGTGTCCAGCATGGACGGAAAGGATTTGAGCCAGTCACTGTCCACTGACATGAACCTGACCCGAGAGGTTGTGACCTTCAGCTTCAGCACATCCAGCACTCCCAGCATCCTCCTGTACATCAGCTCGAGGAGCCATGACTACATGGCTGTAGTGTTGCAACGAAACGGTTCTTTGCAGCTGCGTTATAACCTCGGGGGTCTGCTCGAACCCTTCACTGTCGATCTGGACCAGCGCAATTTGGCCAATGGACAGCCACACAATGTTAACATCACGAGAATAGAAAGAGAAATCCATGTCCAGCTGGACCACTACCCTTTCGTCAGCTACATCCTGCCTGAAGCCTCAGACACTCAGTTCAACCTGGTCAAATCCCTCTTCCTAGGAAAAGTCTTCGAAACCGGTCCCATCGACCCAGTTCTGATAGAGAAGTATAACACTCCTGGCTTCGTAGGCTGTCTGTCCCGAGTGCAGTTTAACAGCATCGCTCCTCTGAAGGCGGCTCTTCGTTCACGGCTCACTTTTTCCGTCTCGCACCAAGGCAAACTGGTCGAGTCCAACTGTGGAGCGTCCCCCCTCACCGTCTCACCAATGTCCACTAACACTGACCCCTGGCACCTGAATGCagGTGCTGATTTCCCATTCAATGAGGAGAGAGTCGTGCCAGATGGAGTGAACAGGAATTCAGCAGTAATTGGAGGCATCATTGCTGTGGTGATCTTCACCATCCTGTGCACTCTGGTGTTCCTGATTCGCTACATGTTCCGCCACAAGGGAACGTACCACACCAACGAGTCCAAAGGAGAAGAACGATTCGAATCAGCTGATACAGCCATCATCAGTGCAGAGCCCAATTTCACAGAGACCATCGAAGAAAACAAGAAGGAGTGGTTCATCTAAAACATCTCTGTTGAAGGACATACAAACTGTTTGAGACTCTCACTGAGGATCGGGAACCAAGCGAAACCCCTTCCTTTGCAACTCGTTTtatttcttctcctttcttttacttgctccctttctttctctgtgtgtttctttgttcctctttctctgtctatctccgTCTGCCAGTGGATCATCAGGGCAGCTTCAGTGAGTTCTTCGAGGGTTCGAGGTTCTCTTCATTTCTGGCTGCTCCTGAAGCTGTGTGATCATAAAGGAGCTGATGGATGTGAATGAGAACGAGGACTACAGTGACTTGGTGGACTCAGGCCTGGCTTTCTGCTGCCCCTGTGCTCAAGAGGAGAATATGAAGACCAAGTCAAGGAGGGATGATGCTGTGAACGAATCTCTCTGTGCAGGAAGTGCAGACTCTCCAAAGCTCATTCTGGACTACAGCAGTTCTGCTGACAAGGAGGTCATATCATAGGTCAGGGATTTAACATCAAAGACCTCACACTTATCGCTGGTGCCTGAGTCCTTTGTAGATCTGGAACCTTCGAGGTCACACTAATCTATGGGACAATCTAGAAACACTAAGAGTTTCTGAGAGTTTAAAGAAATCGACATGTTTGTCTATATTGGCCAGATGATGAACTTCACAGTGATATCATCATGGTGTAACCCTGGAGTGTTTTGTCCCAGCACTCGTCCCAGAGTGctgtttcataaaaaaaatgctgtgcaTTTGTTAAACACAATATCTTTACAATATGGttcttttgtgttcttttgtAATCAGCATGTAAAATGCTATAATGGTACAGGTATGCAATGATATGATGATGTACTCTATGTCTATAATTATTGTATTGGTCCAGACTGTAATTTGTAGACAAATCTTGttgttaatttaaataaatgcacaattaAAATGGCTTAGTTGGATCCAGACTTACTGTTGAGCACCACCTGCCAAACAAAATCAGGATGGGTCCAGAGAAGGCAAGTCGTTCAGTCAAGCCACACCTGACTCCAACATCCAGATCCAGAAATAACACTTAGAAGAGACTTTGTAAATATGGAgaacactctcagaaaaaaagggggCTAAATTGTCAGTATGTCAGCCGTTCAACAAACGTTAAACTTCTTAGTCCTTATTCATATctccatatattttaaattccactgaaatactaattacctcatCTGAGTGACCAACGACTTAAAAAATGTTACTATTTGACAGATATTCTATTTATTTGGTCACTTTTCTAGATGTTTTGTAATAGTGGGGCAGCATGTTCACTGCCCCATTTAgttccatagagttattattgcaccttgTGGTAAAAATGGGAATTGCATCAAGCCCTAATAGAAgcccattggggcaggaatcacagTGCCCCATGCTCACgctatgaacatttttattggAACAGAGCAGCAGGAGGgccagttaatgacagggttgccagattggtctAGTTTAAAAATACCCAGTGGACATCAATATCttgttttatagtaaataaaccaaaaaaatacataaacaaaggcaaagtgtgagtgcagacagtgtgtttaTGCACACTATATAGCCTACATTACAAAGATTGGGTGACAAAGGGAGATTTCCTttcatcagaaatgcgtgtacaccacagtgaccttgtttctaactcaaaggctgagaaaaatgtgtctctgttttcaagtgcctgtttttttttttttttcggctgCAGTATTGAATACATTTGAACAAAGGTTTGTCTGCTCAAAATGATCTGCTAGACTGTATGACTATATGCTATTTAAAAATTCCCTTGATAGCATAGTAGCATGACAGGTAGTAGATAGCATATATCAAGTGGGACAGCTTCtagacttaattttgtttgaggctatattattatacagtgtCTAAATCTATGGTAATGCGCTGCTGCTGTAAACCATTGCTGTGCCACTGCTTGTCGGAGGTGGTGTGCTACACTCAGGCAtgcaccttttgtacctttagtatgtatattttacctggaaaggtgcatgtagtgtacctttaaaatttgactctaaaagctaattataGTCCAATTATGTGCTTTAAATCTTAAAGGTACTAATGTGAAAgatacaaaatgtacaaaagataAGGGTACCCTGACAGTGACGAGGTAAAATAAGcaccctttttttctgagagtacATGACAATGTGGGACAGTGTGCTTTTTTGCGTattgtataaaattatatacgTTTTTTCCAGGGAATTTCTGATTTTGTTGGTAATGGTGGCATTATTAGCCATGatcactgaaataaaacaaaaaggtcTGTAGACATTGATATGACTTCATGTTTAGAATGAATACACAGTAATATATATGATAGAGCTATGTATGTATAATGAGCTGAGTTGGTGC

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07380 CNTNAP2; contactin associated protein-like 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393962 lncRNA downstream 146577 15630223 ~ 15630444 (-) True G332682
TU393956 lncRNA downstream 156304 15620506 ~ 15620717 (-) True G332676
TU393941 lncRNA downstream 158180 15615500 ~ 15618841 (-) False sec61g
TU393913 lncRNA downstream 210375 15566187 ~ 15566646 (-) True G332637
TU393844 lncRNA downstream 379889 15345272 ~ 15397132 (-) True G332580
XR_003404161.2 lncRNA upstream 36230 15935828 ~ 15943189 (-) True LOC113541266
XR_003404166.2 lncRNA upstream 79518 15979116 ~ 15985108 (-) True LOC113541293
TU394080 lncRNA upstream 141714 16041312 ~ 16041512 (-) True G332797
XR_004576975.1 lncRNA upstream 160682 16060280 ~ 16071498 (-) True LOC117595797
TU394284 lncRNA upstream 412445 16312043 ~ 16312879 (-) False cpa6
XM_026937817.2 mRNA downstream 158179 15615498 ~ 15618842 (-) True sec61g
XM_026937893.2 mRNA downstream 194987 15579275 ~ 15582034 (-) True LOC113541101
XM_034298225.1 mRNA downstream 217566 15417104 ~ 15559455 (-) True LOC113541144
XM_034298226.1 mRNA downstream 263015 15417104 ~ 15514006 (-) False LOC113541144
XM_026937949.2 mRNA downstream 362578 15398281 ~ 15414443 (-) True LOC113541141
XM_026938237.2 mRNA upstream 197383 16096981 ~ 16115913 (-) True LOC113541324
XM_026938238.2 mRNA upstream 225519 16125117 ~ 16140956 (-) True tnfrsf11a
XM_026938239.2 mRNA upstream 226213 16125811 ~ 16140956 (-) False tnfrsf11a
XM_034297862.1 mRNA upstream 245458 16145056 ~ 16200311 (-) True relch
XM_034297866.1 mRNA upstream 245939 16145537 ~ 16200451 (-) False relch
TU393587 other downstream 711211 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 839617 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 3099088 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 3099088 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 4693870 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 931098 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 931098 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 1216500 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 1285926 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 2008296 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile