RNA id: XM_026938188.2


Basic Information

Item Value
RNA id XM_026938188.2
length 1629
RNA type mRNA
GC content 0.51
exon number 10
gene id lipib
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17973204 ~ 17983420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCAACGTTTTGTCCAGTAACGATGGCTCTTTGGTGGTTTATGGTTCTGGTGAGCTTCTTCTTGCTTGGCAGAGGTGAAGACAAAGAGTGTGACAACTTTTCCGACGTGGACTTCCACGAGGCGTTCATTGGAACCAACCTGTACGTGCGTCTGCTCCTGTACACACGCGCCAACCTGGACTGCGGCTATGAGCTTCCTCACCACAACTTCACCAAAGTGCCGCTGTTCCACGTGACCCGACCCACCACCTTCGTCATCCACGGCTACCGGCCCACCGGCGCGCCCCCCATCTGGATCAACCACATCACACAGCTGCTGGCCGAGCAGGCCGACATGAACGTCCTGGTGGTGGACTGGAACCGTGGAGCTGCCAACTTCAACTACTTCACCGCTGTGGCAAACACACGCCACACTGCCGCCAACATCACCGCCTTCATACACAGGATGACCgAGGAGGGAGCGTGTCTCGACTCGATCCATCTCATAGGAGTGAGTCTGGGTGCACATGTGGCTGGGTTTATAGGAGCTATGCTGGGAGGCCGAGTGGGACGAATCACAGGTCTGGACCCCGCTGGCCCGATGTTTGCAGGCGTGCCTCCAGAGGAGCGTCTGGATCCGACTGATGCTCAGTTTGTAGACGtcttacacacagacatgaacTCATTTGGCCTCAGAGGAGTTAATGGTCATATTGATTTCTATGCCAATGGCGGACTAGACCAGCCCGGGTGCCCCAAGACCATCTTCGCAGGAAAGTCCTACTTTGTTTGCGACCATCAGCGCTCTGTTTTTCTCTATCTGTGCTCTCTAAACCGCACCTGTCACCTCACTGCTTATCCCTGCTCTTCCTACACTGACTTCATCAATGGCCAGTGCATGCAGTGTGAGGCCTTTTATCCAGCTTCCTGCCCTGTTCTGGGATATGACTTAAGCCAGTGGAGGGACAAACTGTTGAAACTGGGCCAGACGAAAGTCTATTTCTCTACCACAGCAGAGCCACCATACAGGAAGACGAGCTACATAGTGGACACTGTTACGTGGAATCAGTACCTTCGATGGGGGGTAGTTATCCTTCGCCTTCACAGTGGAAAAAATGTAACAGAGACGAGGATCGACCACAAGCTGCTGCAGTTTGAGAAACACACCTCCATGCGACTGCTCGCCCAGTTTGACGAGGACTTGTATCCAGTTCAGAAGATCTCCTTCAGGATCGTCACCGGGAATGTGATCGGACCTCGATATAAGATTCGTCTCCTCCGCATTACGATTACGCCACTGGATCTGCCAGAGAGGCCTCCGATGTGCCGATATGACCTCATCATGGAGGAGAATGCAGAGGTGACCTTCAAACCACTGTTGTGTGATGAGTCCCATCTGTAAGCCTTCATAAAGTTGTCAGGTTACAAAGTGCAAACCAGCTAAGTCGAGGAGTGTGTATCATCTGGCGGGGAAGCACTGAAGAGAGCATTGTATTTTGGATGATCTTCTTGTgcctacacacagacattttctGCATTTCAACACTGACAAGATGTTTGTGGACTTTCTTCTAGACTGTCCAATCTATTCCACTGAATTGGAACTGTTAGTTTGGACTCCaaagtgaatattttttcataaatgaAACA

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K19404 LIPH_I; phosphatidic acid-selective phospholipase A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395485 lncRNA upstream 65523 17907366 ~ 17907681 (+) True G333938
TU395484 lncRNA upstream 67979 17904953 ~ 17905225 (+) True G333937
TU395321 lncRNA upstream 122409 17849795 ~ 17850795 (+) True G333801
TU395319 lncRNA upstream 176683 17781820 ~ 17796521 (+) False pan3
TU395317 lncRNA upstream 215275 17757724 ~ 17757929 (+) True G333799
TU395521 lncRNA downstream 29507 18012927 ~ 18015594 (+) True G333966
TU395506 lncRNA downstream 38319 18021739 ~ 18026962 (+) True G333953
TU395574 lncRNA downstream 60404 18043824 ~ 18045177 (+) True G334005
TU395604 lncRNA downstream 95731 18079151 ~ 18079370 (+) True G334028
TU395608 lncRNA downstream 101899 18085319 ~ 18108804 (+) True G334032
XM_034298173.1 mRNA upstream 9733 17960988 ~ 17963471 (+) True zgc:112408
XM_026938160.2 mRNA upstream 21578 17942428 ~ 17951626 (+) True chodl
XM_026937954.2 mRNA upstream 190793 17761531 ~ 17782411 (+) True pan3
XM_026938142.2 mRNA upstream 233619 17727853 ~ 17739585 (+) True atp6v1ab
XM_026938144.2 mRNA upstream 267086 17678898 ~ 17706118 (+) True boc
XM_026938136.2 mRNA downstream 104227 18087647 ~ 18097915 (+) True ythdf3
XM_026937924.2 mRNA downstream 231443 18214863 ~ 18217206 (+) True bhlhe22
XM_034298031.1 mRNA downstream 331934 18315354 ~ 18323295 (+) False mtfr1
XM_026938225.2 mRNA downstream 389302 18372722 ~ 18378196 (+) True dnajc5b
XM_026938222.2 mRNA downstream 396871 18380291 ~ 18390865 (+) True trim55b
TU394792 other upstream 671200 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 671507 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 673193 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 673193 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 678150 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 3342 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 331936 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 331938 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 331940 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 332263 18315683 ~ 18323295 (+) True mtfr1

Expression Profile