RNA id: XM_026938196.2


Basic Information

Item Value
RNA id XM_026938196.2
length 4170
RNA type mRNA
GC content 0.45
exon number 18
gene id eya1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 14796644 ~ 14848084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTTCGTTCTCaggaggaaggagggaggacCTGGAGGAGGAAAAACGTAGACAATGTGCCTCTCtgttcctcctctctctctcttgctctctctctctccttctctctctctctgtctgtccgtctgctCGGGAATAACAATAATGTTTTCTCAGACAACGTCTATTGTGTCACGGATGGATCCGGACAGTGACACTGAGCTAGAATAACAAAGAGGGACGTTGTTTCATCGCAGGtgggggagaaaaagagaaataaagaaaaaaaggaaaaaaaaggaagggggAAAAAGCCTAGTTGAGAATCATCAAGTTTCAgGTCTATGGAAATGCAGGATCTAGCCAGTCCGCACAGCCGAGTCAGTGGTAGCAGCGAATCTCCGAACGGCCCAAACCTCGATAACTCGCACATTAATAACAATTCCATGACACCAAATGGCACTGAAGGTGATAACATCACTATGCTTACGACAGCCGACTGGTTATTAAGTTCTAATTCACAATCCACTGCAGttaaaacaGAGCCAATGAGCAGCAGTGACATCACCACGTCTGTAGCAGACGGCTCGCTAGACAGCTTCTCAGGAtcagCTATTGGAAGCAGTGGCTTCAGCCCAAGACAAACTCACCAGTTCTCTCCACAGATCTATCCTTCCAACAGACCCTATCCGCATATTCTTCCCACTCCTTCTTCACAAAACATGGCAGCGTATGGACAGACGCAGTACAGCACAGGAATGCAGCAGGCCTACGCCACTTACCCTCAACCAGGCCAGCCTTACGGCATCCCGGCCTACGGTCCATTGTGGGCAGGAATCAAGACGGAAAGTCAAGCTCAGTCTCCAGGACAGAGCAGCTTCCTCAGTTACAGCTCCAGCTTCTCAACACCGCAGACGGGACAAGCGCCctacagctaccaaatgcaagGAGGCAGTTTTACAACGACATCAGGACTGTACGCAGGAAGCAATTCCCTGACAAACTCGACTGGATTTAACAACACACAACAGgattACCCGTCCTACCCTGCATTTGGCCAGGGTCAGTATGCGCAGTATTACAACAGCAGCCCATACACGTCGCCCTACATGACCAGCAACAACACGAGTCCTACCACGCCGTCCACCACGGCCACGTACACGCTGCAGGAGCCGCCGTCCGCAATCACCAGCCAGGCTCTAACCGACCAATCAGCAGGAGAGTACAGTACAATCCACAGTCCATCAACCCCCATTaaagattcagattcagatcgATTGCGTCGAGCCTCGGATGGAAAGTCACgtggaagaggaagaaggaacAATAATCCGTCTCCACCGCCGGACTCTGACCTTGAGCGTGTGTTCATTTGGGATTTGGACGAAACGATCATCGTTTTCCATTCCTTGCTCACGGGGTCTTACGCCAACAGATACGGAAGGGATCCACCGACGTCTGTGTCGTTGGGACTCCGAATGGAGGAGATGATCTTCAATTTAGCAGACACACATTTATTCTTCAATGACTTAGAAGAGTGTGATCAAGTCCACATTGACGACGTTTCTTCTGATGACAATGGTCAAGATCTGAGcACGTATAACTTCAGTACCGACGGTTTCCATGCTGCTGCCACTAGTGCCAACCTGTGTTTGGCAACCGGTGTGAGAGGAGGAGTGGACTGGATGAGAAAGCTGGCCTTCCGCTACAGACGAGTAAAAGAAATTTACACCACCTACAAAAACAACGTCGGAGGACTGCTGGGTCCGGCCAAAAGGGAGGCCTGGCTGCAACTGCGAGCAGAAATTGAAGCTTTGACAGATTCCTGGTTAACACTGGCACTGAAAGCACTAACATTAATCCACTCAAGGTCAAATTGTGTGAACATCTTAGTGACCACGACGCAGCTCATACCCGCCCTCGCAAAAGTGCTGCTCTACGGACTGGGAATAGTTTTTCCAATCGAGAATATTTATAGCGCTACGAAAATAGGCAAAGAGAGCTGCTTCGAGCGAGTAATTCAGAGATTCGGGAGGAAAGTTGTTTACGTGGTGGTGGGAGACGGAGTAGAAGAGGAGCAGAGCTCCAAAAAGcACAACATGCCCTTCTGGAGGATCTCCAGTCATTCGGACCTCATGGCTCTTCATCACGCGCTGGACTTGGAGTATTTGTAGCACTGTGACATCCTCATCTCTCCACTTTTACTCAGCACGGACCGACAACAGAACGTTAACACACTTCACAGGGGAAAACAAACGTTAACACACAGGTTATAAGTGCAAATCGGTCCGCGACTCGTCTTAACCCTAAACCTCGGCCCTCAGTGGAGCGGTCGAATGGAGGATTGCGAATTTTTACGACGTTGCAGCTGGGGGTTACTGTGAATTGACTCGGCTTCTTTCTGAAAAAGCCGTCAGAATGTTttacggattttttttttctggaaaaaaaaaactctgcgaAGGTTCACACCTGTGAGGAAACCAGAGCTACCAATGTCGCTTTTGGCTCTTAGCGAGACTCCGATTCCACTGAGATTCAGCGTGATTTCCCCTCTTCTTATTTCTCGGGTTCACTTGAAACCACTGCGCCGGATGTCCTACGCTTCTAATTTATAATCAGAGACTTTGTTGAGCGCTGCCGTCGCCCTGCGAGAGACTTgttgccttttttgttttgtgtgtttctcgCCATTCAAAGTACTTTGATTCCAAGAAGACGTTTATGGAGAAGAAGATGGATTTTCTAATAatttaaggaaaagaaaaactttatCTGCATTTGCTCAGACAATCAAATGTGTACAGAATACGgcagtttttgtgtgtgtgtatatttttaatcactggACTATTCCTTCCTGTTTTGCTTTAGCTACAATTCATGctattcagtgcttttttttttgtggaagtACACTAAGGCAGGAGTGCACAAAAAAAACGTGTGCGGGGCCTAAAAGTGTTGCTTAATGGTTTAAGTGTAGATTTGAAAGATTTCTTGAGAATTTTCGTCATGACCAAAAGCATGGATGTCAAGTGTCAATGATTTCGTATTTTGTTTACggatttattgattattttattttttctcctccCTTGCTAGTCAAagtttctgtatttatttacagaacctcagtagcattttattttttaaaaatacatgtatttatgGGATTAGACACATCAGAAAAGAAAGTAATAATCAAACTGAATGTCAAGTTTTGAGTTGAGCGTCTGTATGCTCACCACTGACTCTTTTCTCTTTAATGTTTAAAAGCAGTTAGACCTCAAACTCCACAATATTTCAAGGTTTTGTTATCTTTTGTACTGGCACTAAAAGCAGAAACTCTTGTACATTAAGTGTAATTTTTGTATGAAGTAgtctttttaattttgattttttggAAACGTCGCTGTAGAAATTCTTCATAGTGCTTAGATAAATAAGACTGTGGACTTGGGAAACTTTAAAGCTCTAAGGACTGTAAGAAagccactacacacacacacacacacacacacacacacataatgacgCAAAGGGGTCAAGAACACACATGCGCTACCGACTGTGAATTTCCTCAGCAGGAATTGAATCTGTGTGTGAGTTTCTGACCGGTTTCTGCTCCGTCGTCAGTGTTGCTTCATTCCTGCAGGTGAAGTGTTCTACTGCCCCTTTTACCCTCTTCCCCTTCTACAACCTACCCGTAACTACCCACCACCCTCTCAATCTAATATATGCTTCTTTAACCCAAAGTCTACTCCACTTAACATCCCCCTATATAAAATCTGCCCATTTAATCTGCCCCGTAACCCCACCCCACCTACATTCTGCCCCTTTAACACCACCACAACTTTTTTGCCCCCTTCTTCCCCCCTCTCCCATATAAAATCTGCCCATTTACTATGCTCCTTCCTCCCATCCCCCAGAGTAACACATATTGCTGCTAGTTCATGGTCATATTAGATGGGAGATGTTTTATACAGtaagctttttttaataataaatattgcaaTCATAATGCAAACTGGAAAACCATTGACGTGGGCCTCGTCgtgaacacacaaacatttgttgtgtctgaaaaaaaagatatgtacagatgtttttttgacattattatttgattgtgtttaaattaataaaacattgatTTGTGaactggtacacacacacaccatcctctg

Function

GO:

id name namespace
GO:0071600 otic vesicle morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0021984 adenohypophysis development biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393268 lncRNA upstream 99750 14688163 ~ 14703270 (+) True G332111
XR_004576995.1 lncRNA upstream 840836 13958024 ~ 13962184 (+) True LOC117595809
TU392599 lncRNA upstream 1420384 13380644 ~ 13382636 (+) True G331502
TU392593 lncRNA upstream 1440318 13361369 ~ 13362702 (+) True G331496
TU392595 lncRNA upstream 1442002 13360280 ~ 13361018 (+) True G331498
TU393426 lncRNA downstream 96907 14944991 ~ 14945212 (+) True G332238
TU393440 lncRNA downstream 107776 14955860 ~ 14956067 (+) True G332248
TU393531 lncRNA downstream 217891 15065975 ~ 15113514 (+) True G332334
TU393529 lncRNA downstream 263579 15111663 ~ 15112523 (+) False G332334
TU393555 lncRNA downstream 353733 15201817 ~ 15202305 (+) True G332348
XM_026937830.2 mRNA upstream 81443 14714795 ~ 14721577 (+) True xkr9
XM_026937982.2 mRNA upstream 225777 14566563 ~ 14577243 (+) False pabpn1
XM_026937980.2 mRNA upstream 225778 14565792 ~ 14577242 (+) True pabpn1
XM_026937981.2 mRNA upstream 227390 14565793 ~ 14575630 (+) False pabpn1
XM_026937930.2 mRNA upstream 238346 14543991 ~ 14564674 (+) False zfhx2
XM_026938122.2 mRNA downstream 236437 15084521 ~ 15110314 (+) True trpa1b
XM_034297859.1 mRNA downstream 273142 15121226 ~ 15129603 (+) False flj11011l
XM_026937852.2 mRNA downstream 274393 15122477 ~ 15129603 (+) False flj11011l
XM_034297860.1 mRNA downstream 276650 15124734 ~ 15129603 (+) True flj11011l
XM_034298109.1 mRNA downstream 286269 15134353 ~ 15224591 (+) False stau2
trnat-agu_17 other upstream 1417746 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 1544604 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 2090342 12706939 ~ 12712678 (+) True G331263
XR_003404147.2 other upstream 2646233 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 3054461 11738158 ~ 11748559 (+) True ankha
XR_004576981.1 other downstream 403551 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 718091 15566175 ~ 15566663 (+) True G332636
TU394735 other downstream 2259388 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 2259388 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 2436998 17285082 ~ 17300011 (+) True G333388

Expression Profile