RNA id: XM_034298269.1


Basic Information

Item Value
RNA id XM_034298269.1
length 4960
RNA type mRNA
GC content 0.39
exon number 7
gene id sec22c
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17163000 ~ 17171598 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATTTGGGATGCGGCGAGCGTTTGTTCAAGTTTCTGTGACGTTTCCCTCAAAcgcagagagaaataaaaagctgtTGGTTGTCAAAGAGCAGAcatgttatactgtataacaataaataaaccgGATTAACTGAGCTGCTTCTGTCCTCAGCATTCTGCAACTAACCCACAGGGCAAAAGCGTGTTGTGCAGCTGTTCATTACTATCATGCAGAAGGAGTTGAGTAAATCACTAAGGTAAGAGACGGATGAGTCTTgcggcaggtgtgtgtgaacgAGCATGTCACTGATCGTGTTTGTGCTGGTGGCGCGGCTCAGGGATGGACTCCCTCTGTCCGCCTCCACCGACTTCCAGCACAGCAGGGAGCTGCAGGAGAGGAAGCAGCAGATCCGCACCGTTTCAAAATCACTGAACTCGCTTCCTGAGAGAGGGATCATCATGGGCCAGGAGCTCCATATCTActtCTTCACGTCTGACGGCGTGGCctacctgagtgtgtgtgtgtgcagtgtgtctgCTGCCGTGGCCTTCAGCTTCCTGGAAGATCTTCGCTGGGAGTTCACGGCCAGCTTCGACAGCTCGGTGGTGGCCCAGGCGTGCCGGCCGTACCCGTTCCTGGACTTCGACGGCGTGATTCAGAAGCTGCAGCAGCACTATAACCAGAGCGGAGGTCCTGCTCTCGGAGTCACTCTGAGCACAGTGCAGGAGGAGCTCAGCCTCAGTCCTCCTCACGTCCTCACCATGGACGAGATACAGCTCAGTAACGGAGTCCTAAACGGCCACGCAGAGCAGACGGCCTCGTCAGGTCAGACTCAGAGGCTGGAGCCCGTGTCCGCTCCTGGAATCCTCTCGCTCATCCTCAACATCATGTGTGCTGCTCTCAATCTGATCCGGGGCGTCCACCTCATCGAATACACCTTCCAGGATGATTATGATGGATTATGGAATGTCGTGGCGTTTCTTGTGGCGTTTGTGTGCTGCGTTTGCCAGTGCCAGCTTTATTTATTCCACTCATCCCGGAAGAAGATCAAGTCCTTAACACTCCTCACCATGATCATCCTCTGCAACGGCTTCCTGTTTGGCCTGAGGAACGTGTGGCAGCTGGCCTTCCACGTGTCCGTGGCCTTCGTCTCCACCCTCCTCATCCTCAACCGCAAACTACTGGACAGGAGCTCAGACTGTGGGGtgtgagctcacacacacacacacacacacacacacacacacaccctggcgGAGTCTGCTGGTGCTGCGTCTGAAAACACACGAGGTAGGACACAATGTAGGACGTGACACGTGACTGTCTCAGGCTAGCAACAGCAAAATGATCCATTTTCAACAGAAGACCAAATTCCAGGACAAACAATTGGACAATTTCTgaatttttgtatatttgagTGTTTATAGCATAATACTGTTTCAtcagttgtatttttttaatcgcaCACAAATAGGTGGCTAATGAGcgggtttttttcttcacaaatcGCTATGCTTTTTTGTAGGACATATTCTGAATGTAATAAGGTTGAGAGATTAATACAGGAACTTTAGGGACAATCTTAAATAAATTGTAGGGtttgtgttaaatatgttaaatatgaaaaatatccccttgctaaaaaaaaaaaaaatgtttgatgtaattTTTTATCAGGTATTTAATCTACTTTTGTATCAGGAGATTtaagtcctttttttttggcaagttTCTGATTTATTGATTTGTGTTAAAAAGCTGAGTTGAGTAGCCCTGTCATCGCACAGTATCCCAATGACGTATTACACAGGACCTAGTTTCTTAGCATATTTgtcaaaaaataattatttgcaCTAATTAATTGTTTacaagtaaatttaaaaatataattttctaGGTGTAATGCTCAGAACTATGCTCATTTTGTAGCTGGCAGTATTAGCTGGTATGATTAACAGATGATGATGTACCATATTTTCTGGAGTTTACAGCAAGTTGTTTTTCCCCACCCTTCTCCTAAAGCAGGTTATACGCTAGAATCCTGGCATtagccttttattttattattttttttaaatgatagtCCTTGCTGCAGCCCCAAGAGTtgagggggtggagctggatctgATCCTACTCCTCCTAAGCCTAACCCTAATCCCCCTGAGCCAGATGAAATACTGGACTCTTTAAAAGCTACACTGGTTGTACATTAGTATGTACCAGACATTTTTATGTAACACAGTGACTACAGTGAAATtacatttatgtgttttatCCTCAATGAACTGAAATTACAGTCCAGAAAATATGGTACAATATTAATTCcagttttaatttttgttttttttcagtaacgGTTACATTGTGACATTGTGATGAATATTGACAGAGTTGTAACTAGCCGTGTGCCGACATAATGATGTTACATTAACCGAATGATTGAATAACGTTTTATTATCACAGTTTagcttttatgttttaaaacaaaaacagtcttACAGCAGTTGTTCAGCTAACATAACTAATCTTTTTACACAGTTAGCTGTTGTAGCATAGACCAAGCTGACAAACTCGGCTAGCTAAAtgaatctagctagctaattacatacacacactgtggtgTCTGCCAGGCCAAACACTTTTCAGTCACTTCATTTTAGTCTTAATTTATCAGAATTAATTTGAAACCAATAAGCCTACATTTCATGCATTAGCTTTGCAATTAATCTTTAATACCAAGTGTTGTGGTAACAGCTAGCATCTAATGCTACATGCTTCATTATTTCACATAGCATGTGTTTCTACATAGagttacattttgtagtgttcaACAGCAATTATTTATgatacattatatttaaaatgatttaacatCTTGTTATATGGCAGGCTTAGTAAACTCTAAATCGTCAAGGGCTCCATTTTTACTGACAAACTTTTTAAACAACTTTTAGCGTAAAGCTACAAATCCTGATCATGGCCTCACTCTGAGGTTAAGCTCATGAACAGACTGAGGCGACAGTGAGGATTTTTACAAATGCACATATCCTAACGCTCGaagtctgtaattcctaaactacTGTGTATATtggaataataaaacatatttttatatttttacatttgtaatgtTTAGAGATGACGTGTATAGTGTAGAAGTTTTAGCTGTGCTAATAGGTTTCAAGAAAATGCTTGTTGTAaatgttttgattgtttttttcccagattTGTAGACAACAAATGTAGAAAAATTCCTGTGGGTTTACATGATGTACAAAgtcagttatttattatttttaattaatgtacatTTTGAAGGAAAGTTTGTTGCAGAAAGAGCTGAGATTGTACTATTTATACCTGTGGTTATAACGTGCCTGTGTGTTCTTATGTCATATATTCGAATTTACAGAAaccaaacaaaatcaaacaaccaTACAAACAAAACACGCTCATAGCTGAGGATCATAGCGTCTGTCATTTATACAGTTCAATAGATCACACTGGGTTAAACATGGATTCACTCACTAGCTGGTGGTAGGTTCTGTGTTAGAGATGcaaaggttgtgagttcaaatcccatgaACTGAGCTACATAAAGACAAGGAAAAtttctgtaaaacattttaggaaaaaaatgtatggcAGAAGTATAGCGAGAGGTAATTCGAGGATTGTTCAGTAGGTGACATCTACAGGGTAACTACAGATCAGTATAAAATAGCAGAGGAAGAAAGTCCATGACCACAGAGGAACCGCAATGTACTGATCTGTATCTTTGAactcaaatcccagcactgacCGAAAGCCACAGCTGGACCTTAAGCAAAACcctctgaagatgaatgaaagagtaAAGGTCTTTTTGTGTATGCTTAAGGTTTCTTAGCTTCGTAAGAGTTATAGATGGTTTCTTGTAGAGAAACGCTGTGCTCTAGTGTTCTACATACAACCGTCAGGGACAACCAGAAACCCTGTAAAGCTTCCAAGTTTGACCTTTTTTCTCCTAAGCGTGTACTAATGTGGTGTAGTATCGCAGTAGACAGAAGCAACAAACAaatacttgtttttattttaatttttttaaactgctgtcATCTGTGAGATGCCGTTTAATCTGTTAGGATTTTTATAAATCATGTAATGGACAACCAGCATAAAAAGTGTTACCTGTTCTGCATAAAGGCCCAGCAGTGGCTCTTTGGGAATCCTGCTATTTAAACTCAtacaaaagtttgtgcactGAGTTTCCACTGATAGTGAGGAAGAAGCTCTAGTACATgcttataaacaaacacacacacacacacaaaaaaaagtaaattatgaAACTGTGGATCCAGTGAATTGGCCTGGTAATACACTCTGTTCTGTTACATCAAAAAAACACCATACAGTAGATCAGGTTTGTCCAGCAATATTAGGAATCACATACACAGTGCTCTGTTTTGAGTATTTAACCATGTGTGTAAGTTTAAGCATGTGATCTACAGTAAAGTCTTAGGCAATATGTTACTTTttctttatagaaaaaaaaatctgtaacatttgGTTTTGGTTAGTAAAGTAGGTTtcgaaatgtaattttttttttttactaacacaataatacaaaagtcataaaatgaacatttaagacaaaattaatataaaaaaagagattaCATGGTACTGTTCAGTACTGTACAATCTTTCAGTAATAATTCTGTTATgaaataagctccactcttttTCCATTATACAGCTTGTATGTTCGGCTCGGAGTGTGATTTCTACATCTTGGgtttttttctaaaagaaatGTGGTCCTTACACTCGTCCATGAACTATACTGACCAAACGAATGATAGTTTGTTTTAACTGCCATAACTGTAATGTAACATTTTCCTATTAGCTATGAACAGTCTTTACATACAGGAAAGATTTGTTTATGTGAGTGATTTTATCATGATTtgtgaattaaatttttaaaaatgtcaa

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048280 vesicle fusion with Golgi apparatus biological_process
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08520 SEC22A_C; SEC22 vesicle trafficking protein A/C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394629 lncRNA upstream 265145 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 272839 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 273271 16888906 ~ 16889729 (+) False LOC113541357
TU394614 lncRNA upstream 333021 16732916 ~ 16829979 (+) False G333232
TU394762 lncRNA downstream 14531 17186129 ~ 17186675 (+) True G333360
TU395018 lncRNA downstream 191273 17362871 ~ 17363075 (+) True G333548
TU395063 lncRNA downstream 274587 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 369039 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 496038 17667636 ~ 17667844 (+) True G333787
XM_026937903.2 mRNA upstream 47224 17111768 ~ 17115776 (+) True klhl40b
XM_034297884.1 mRNA upstream 53227 17100164 ~ 17109773 (+) False hhatlb
XM_026937901.2 mRNA upstream 53227 17101170 ~ 17109773 (+) True hhatlb
XM_026938111.2 mRNA upstream 64655 17086210 ~ 17098345 (+) True gars1
XM_034298162.1 mRNA upstream 77524 17074213 ~ 17085476 (+) False spag6
XM_026938185.2 mRNA downstream 113506 17285104 ~ 17286736 (+) True LOC113541296
XM_034298096.1 mRNA downstream 115542 17287140 ~ 17290895 (+) True LOC117595788
XM_026938186.2 mRNA downstream 124975 17296573 ~ 17299390 (+) True LOC113541297
XM_026937860.2 mRNA downstream 139123 17310721 ~ 17315700 (+) True fam162a
XM_026938246.2 mRNA downstream 158236 17329834 ~ 17333509 (+) True si:ch211-161h7.8
TU394735 other upstream 52973 17107472 ~ 17110027 (+) False hhatlb
TU394736 other upstream 52973 17107472 ~ 17110027 (+) False hhatlb
TU393912 other upstream 1596337 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1898413 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3777726 13385201 ~ 13385274 (+) True trnat-agu_17
TU394798 other downstream 113484 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 115562 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 115562 17287160 ~ 17295054 (+) False G333388
TU394801 other downstream 115562 17287160 ~ 17300011 (+) False G333388
TU394805 other downstream 115562 17287160 ~ 17291065 (+) False G333388

Expression Profile