RNA id: XM_026938208.2


Basic Information

Item Value
RNA id XM_026938208.2
length 3079
RNA type mRNA
GC content 0.49
exon number 16
gene id map7d2b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17997667 ~ 18019023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

attaaaaaaaaaaaaaaaaagagagagagagaaacggacACGTTTATCATtctatcattttatttctcacttCATGTAAATCATATCATGTAATTATTGCACAGTAATATCGAGCGTGCTTGTTGATTAGAGTGAAAGCTGTAATTGTCTTTAGCATTATTTTTGGAAGAAGAAGTGGAGATGGCTGCAATTGTGGAGAAGACAAATTCAACAAAAGACCGAGCGAGACTAGCtcgagagaagagagaggagagagagaggtttcaAGCATCACGGGAGAAGGAGCTGTGGGAGAAGGAGCAGCGCTTCCGTAAGCAGTATGAGCGCTCGGTGGAGGAGCGAGGGAGGCGTCTGGAGGAGCAGCGGCAGCGAGAGGAGCGTCGCCGAGCTGCTGTGGAGCAGAAGAGGAGGCAGCGTGGTGAGGAGGAGAAGGAGCACCTGGAGGCACTGATGCGGCGCTCGGAGGATCGCGGCCCACCGCTGGAACCGAGACCCAAACGCTGGACGTGGGGCGGCCCGCCACGGACCTGCGAGGTACCAGACTTCATGATTCCACCGGAGTGCCCAGAGCTAGACTTGATCGCCTGCCTTTCCTCCTCTAACTCCTCAGCTGCTTTAGCACAAACAACAGAGAGAGCCTCGCCCAGCCCCCACAGGTCCCCGTATAAGGCCTCACCGAGCAGAGCCGAGCGCAGGAAGGCCAGCTCCACATCTGGACCATTGGAGGAATCCCGAGGGGCTGCCACAACCCCCAAAACCCCCCAGACAGAGAAACAAGTCGGCGTGATCACCGAGTCCTCAGCAAAGCAGCTGGAATCTCCCATGACGCCCACCAAGAACTCGTCTGGCTGCAAGAAGCCCAGCACACCCAAAAGGTCCAAGTCATGTAAGAGCCGCATCCAGTCTCCGTGTTCTCCCGGGCAGTACCCCACCTCACCTATGAAGCACAGAGCCATGACCCCGGGTGCAGACAACAACAAGAGGCTGGACGGAGAGGAGAAAGGTCTCGAGAGTAAAAGCTCCAACACTCTGGACAGGAAAACATCAAGGACTGAAAAGATTCCCAAATCTGCAAGCAGAGAACTCGGACATAATGCAGAGTCTCCAGTGACTCCGACTGGAAAAGCTGGAACCACTGATGCTGAGGAGGCCTCCAGACTGCTGGCTGAGAAACGACGGCTGGCCAGAGTGCAGAAAGAGCAGGAGGAGAAACAGCGACTGGAGGAAGAGAGGCTTAAGGCCGAGGAGCTCCAGAGGAAGCAGGCGGAGGAGCGGGAGCGACAGGAGCAGGCGGCTCAGCAGGCAGAGAAGGAGCGGCAGAGGCAAGAGGAAGAACGCaggaagaaagaggaagacGACAAGCGGCAGAAGGAAAGACGTTTGAAAGAGCTCCAGGACCAGCTGGACAGAGAGagggAGGAGGCTTTCCAGAGGGTGCAGAGGGAGGCGGAGAGGAAGCAGCAGGAAAGAGAGCAGCTCAAACTGCAGGAAGAGCAAGAGAGACTGCAGAGGAAGAAGCGCATTGAGGAGATCATGAAAAGGACAAGAAAAACTGACACAGAGCCAaagAAAGATGAGACGCACACTGAGTCCAACTCGTCCGTGATTGAGTCGGTCTCTGTCTTGGAGTCTGCAGATGCTGGACAGATTAATGGTCCCTCCATCAGGTCCTCAGAAAGCTCCACTTTTGAAAAGTTTAAGAGTGAATTCCCCTCATCCATCACAGCTGGCTCGCCTGTGATAAACCTACAGCCTCTGGAAGCTAAGGGGAGTGTGGCTGATGACCTTTCAGATGGTGTCCAGTCCATGGATGTAAGCCCGGTCTCTAGAGATGAGCTGATGCAGGAATACTCTCCTATCAGTGAGAGCTCAGAGAACCTCATGAGGAACCCCCAGGCGCTGGATCTCCTGCCTCTCACTGGACAGGCTGCGTATCCTAAAGCTGGGGACTGCAACAAAAACCTGATCCAGAGCTTCAGCACCGCCACCGCAGACTCAGCGCTCATCCAGAGTCTTGGGCCGAGCATGGATAAGCTTACTGTCTAGTGCAGCAGGGTATACGTCACGTCCTGGCTGTGTTGAAGAATGGTTTGGATTTGGCCTTCGTCTGTCGTGCCTCTGTTCCAGCTCTTACAAACCTCTCCTCAAGAAATCCATGTGCATCTTGGGGAAAAAGGAAGGAGTGCTGAATCAAGTAGTTACACatagaataataatgataataataataataataataatttaaaaaaagctttgcCTTTTCTTCATAGGTATACCATTTCAACATATTTCACCGTAGTAATTGCTGGGGAAAGCAACTGTATTGCAGCTCTTGCAGCCGTAGTGATCTTTATattcctgtaaacacactgtagagTGGTACACGAGCCTTGTAGCAACTTTATACAGTTTTGCTGCGAGAGCACAAATGACCAGCAAactgactgtgtgtatatgtgttgaGTGTGATGTGTCATGTATCAGGGTTTCGCAGTTCTTCAGTAAGCAAAGTCATGCGAGAGTAAAACTGTTATAACACAAtagtatgctttttttttcataacgcCAACAAAAGAAGGAAAGACTTTGCAAAGATGTAAACTATGCAGGCCGGGCAAAGTGTAAATCATGTGTACACTAgtgattaaataataacacaatgcTACAGCTGTACAGTAAACATCCCGACTTAAAAGCTCTCCAATACGCTGAATATGTGTGTTATCTTGTTAAACGGCtctgtttattacagtcttGCATACTCAGGAGGTGTGTTCGAGCTTTGCATGTGAGCACAGTCGTATGGATTCCTGATGTTCCTGTTTGCTGGTGGTCCTAAGTGACGTGTACGAGGTGTATGATGTAACACTCCTGATGAACTTGAATGGTTGAGGACCAATAAGATGGCATTTCAGGGTTGAGGGTTCTGGGTCATGTTGAGGAAAGGGTCAgtttcattctcattctcattctcacgTAAATCCGTTGCTTCATGGTGATAAATGGTGCATGAATCAAATGCTCTCGAACCGCAGAAAAACCTGGGATATtgaaacaacaataaaattatTGAGCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395528 lncRNA downstream 72878 17924491 ~ 17924789 (-) True G333971
TU395486 lncRNA downstream 90861 17905908 ~ 17906806 (-) True G333939
TU395481 lncRNA downstream 94812 17902633 ~ 17902855 (-) True G333934
TU395479 lncRNA downstream 95284 17899839 ~ 17902383 (-) True G333932
TU395207 lncRNA downstream 455315 17541846 ~ 17542352 (-) True G333700
TU395616 lncRNA upstream 9553 18028575 ~ 18028834 (-) True G334038
TU395628 lncRNA upstream 60131 18079153 ~ 18079979 (-) True G334050
TU395620 lncRNA upstream 75481 18094503 ~ 18099286 (-) True G334042
XR_003404169.2 lncRNA upstream 88675 18107697 ~ 18109070 (-) True LOC113541306
TU395659 lncRNA upstream 122406 18141428 ~ 18202900 (-) True G334079
XM_026937815.2 mRNA downstream 2521 17984044 ~ 17995146 (-) True zgc:112982
XM_026938077.2 mRNA downstream 65853 17916084 ~ 17931814 (-) True zmp:0000000991
XM_026938079.2 mRNA downstream 81111 17909324 ~ 17916556 (-) True c22h11orf65
XM_026937923.2 mRNA downstream 88925 17907584 ~ 17908742 (-) True LOC113541127
XM_026938263.2 mRNA downstream 97991 17890350 ~ 17899676 (-) True LOC113541342
XM_026937803.2 mRNA upstream 2642 18021664 ~ 18026948 (-) True eif1axb
XM_026937833.2 mRNA upstream 10492 18029514 ~ 18077339 (-) True rps6ka3b
XM_026937834.2 mRNA upstream 10492 18029514 ~ 18062080 (-) False rps6ka3b
XM_026937832.2 mRNA upstream 10492 18029514 ~ 18056615 (-) False rps6ka3b
XM_026937831.2 mRNA upstream 10492 18029514 ~ 18056604 (-) False rps6ka3b
TU395529 other downstream 70832 17925075 ~ 17926835 (-) False zmp:0000000991
XR_004576970.1 other downstream 81111 17909938 ~ 17916556 (-) False c22h11orf65
TU395488 other downstream 88855 17907894 ~ 17908812 (-) False LOC113541127
XR_004576994.1 other downstream 758561 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 857982 17116098 ~ 17139685 (-) False zbtb47b
trnay-gua_3 other upstream 360014 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 360627 18379649 ~ 18379734 (-) True trnay-gua_4
TU395863 other upstream 423333 18442355 ~ 18442995 (-) False mybl1
TU395862 other upstream 425636 18444658 ~ 18520205 (-) False mybl1
TU396861 other upstream 1557086 19576108 ~ 19578920 (-) False nup58

Expression Profile