RNA id: XM_026938210.2


Basic Information

Item Value
RNA id XM_026938210.2
length 2897
RNA type mRNA
GC content 0.53
exon number 16
gene id ccdc191
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17378301 ~ 17390639 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTCGGGTTGTTTGATGGGTTAGACGCTGTAATGTAGTTATTAAATCGATTTAGAACTTTGAATGAAAAAGTTTGAAACTTATATCACCAATGCTAAAGATCTACACgacattttaatttagtttaagtaaaatgtttactttttctcTGTGTATTATGGAGCTAAATTCCGTCTATTTGTGTATCAGCTGAACTGTATGACTTAAAAATGGCACATCCATCTGATATGTTTCACTGGAAAAGATTTTCCAAACCTGGAACCCAAGCAAGCACCAAGGTGCATCTGAATGATGGGGATATAAACACCTGGATAAAGAAGGTCGAGATGGCATCGGAGTTCGCTGTGTCTGAAGTGTTTTCATCACAGAAACCACACACTGGTAAACCGAGCCGCGTTGTAGCCCTGCAAAGCACGGATCAGCTCCAGGACCATGATGACGCATACAGCGAAGCCCAGACTATTCTTAGCGATTGGATGAACAAGAAGCTGCGCCTAGAGCTTGAAATGgacgaggaagaggaagaagatcTGGCTGAAGATCAACCTGCAAACCTGAACTACAAAAACTTTAATGATATGTATTCCCAGCTTGCGCCTGAAGATGAGAGCTTTGAGGTGCGCCACTTCCTCCAGGACTTGATGGAGACAGACGTGATGGATTGTGAGACAGTACAGGAACTCCGGATGGACAATGAGAAGAAGAGAGGCCGTGATCCGAACGTCACTATGGAGATACGACACAAGCAGGTCAAGGAGCGGCGTGCGCAGCGGGACGCGGAGCGGGAGAGGCAGCGCAGGGAGCAGGAGGCTCAGAGGGAAGCGCTGGAGGAGGCTAAGTGGCTGGAGCGCGAGgaacagaggaagaggaaacaGGAAGCTCAGAGACAGGAGGAGCTTTTGCAGAAGGAAGTGGTGCGTCTACGCAGAGAGATGCAGGAGAAGAAGAGCATGGAGCAGCTGGCACGAAAGAGGGAACGAGAGAGGCTGGAGAAACAAAACACCATCAAGAACTCCATTACGCCAAAACCTGACTTTGTCACGCAGAGGCAGCTGTGCCACAGAGCGCAAGAAGTGGAGGCCAAGGTCCACATTCTCAACCTGCAGtgtaTGCAGAAGCACTTCTCCGCCTGGTACTCTGTGGTTTTAGAGAAAAGGGTGTGGCTGGGTAAAGCAGCGGCGCTCTGTGATTGGAGGAGGCAGCTGAGGGCGTGGCGGGCGTGGAGGGCGCTGGTGTGggtgaggagaaaagagagagaagctgaaagGACAGAGGAGGAACTGAGGTTGGAaaacagacGCTGTCAGCTAGCAGAGGAGAGTGATCGAAGACGGCTCCTGAGGCGCTGCCTGAGTGACTGGCGTTTGTGGTGCCGAATGGAGAGAGAGCGGAGGGAACTACTCAGCCAGCAGGAGGAAACCAGGCAGAAAATGGCCGCGCTGATCGATGCAGCTGCTTCAGGAAAACTAACAACAAAGAACTGCACCGAAccaccaatcacagtccagccAGAGACCGTGAACCAATCAGAAAACACACCTCAGCTGGCCCAGGTACCAGTACAAAGAACCACCTCAGCTCCTCCTCCACCCactttgactgacaggagagcAGCCCCACCCACTCAGGCCTGGCAAGTGACTCGTCGTCACGCTGCACTCTCTTTAGCTGAGGCTCGGGAGGGGCGGAGACTGAGTGGCGCCCCCCGCTGTCAGAGCGCAGAGATGCGCGGTGGCCGGTTTGAGCATCGTCACGTGGCTCAGCAGAGGACCATCGCCGAGCAGAAACGCCTTCTTAAAGAACAGCAGGAAGTTATCTCCGAGCTGCAGGAGAGACAGAAACTTCTGGAACTCAGACAGGAAGCAGAAAAAGCTGAACAGCTAGCAGTCCAGCTCAAAATGTCAGCATCTCAGAATATTATCAAGACAAGTCATGGATCAAAAGGAGCCTCAGGTGAAAGCAGCGCCAGTCGTCCAGCCCCCAAAGAATATGACAGTCGTCTGGCCAACCCTCACCCTGCAGTACGAGCTATGGAGGAGAGAGCTCGGCAGCGTGCGGAGCGCAggagggaggtggaggaggtgaagAGGAGGCGGGAGGAGGAGAAGCTGgcTCAGATGaaggcggaggaggaggagagactgaggcaggaggaggaagagaagcgCGTAGCGGCGgaaaggaggagggaggagaggagacagaagaaggagagggaGATGGAGAAGCAGAGGAGAACAGAGCTGGAGCAGAAGTTGTTAAAGCAGGCAGGAGAGCACTACCGCCGTTCCCTGCTGCTGCACAGAGGAATAACACCATGGAAGCGGCTAGTGGAGCAGAGCCAAGCCAATGctcagAAAGCTGTGGCGCATCACACACAGGTTCTACAAAGACGCTGCCTTCTGTTTTGGCTACACACAACAGACGAGGCACTGGCGGAGAAAAAGAGCCGTGCAGACCATCTATATGAGTGCATTCTGCTCCGGCGAGCCCTATACAGCTGGAAAATGTTTAAGCACCTGCAGTCTCACCTGGAGGTGCGAGCTGAGCACTTCTACATGACTCAGACTCAGAGGAAGGTCTTCAAGGTACTGCTAGATCACGCAATCCACCAGAGACTGGAGGCCTGGGACAGAGAGCAGCAGGCTGACGAGCACAGTGCCAGgcgcGTGGTGAGCAGATGTTTCGCTGCTTGGCGGCGTCTGCCGGAGGCGCTGCAGGAggaaagagagcgagaggagCGGAGAGAGCAGCTCCGACGCAAAGTGGCTGAGATCCTCCCGGACTTCCGATCCTCACCGCTGGACGCCATATGGAGCCCGGTGTCGCACATCTAACAAAATCAAGACCCCACCATTCCCATTTCTTGAAAAATAATTGGCTGGAATtcatgaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395018 lncRNA upstream 15226 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 191626 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 480446 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 488140 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 488572 16888906 ~ 16889729 (+) False LOC113541357
TU395063 lncRNA downstream 55546 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 149998 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 276997 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 279777 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 317083 17707722 ~ 17712380 (+) True G333779
XM_034298150.1 mRNA upstream 24992 17336192 ~ 17353309 (+) True drd3
XM_026938106.2 mRNA upstream 24992 17336192 ~ 17353309 (+) False drd3
XM_026938246.2 mRNA upstream 44792 17329834 ~ 17333509 (+) True si:ch211-161h7.8
XM_026937860.2 mRNA upstream 62601 17310721 ~ 17315700 (+) True fam162a
XM_026938186.2 mRNA upstream 78911 17296573 ~ 17299390 (+) True LOC113541297
XM_026938140.2 mRNA downstream 41407 17432046 ~ 17434825 (+) True urad
XM_026938141.2 mRNA downstream 42145 17432784 ~ 17434825 (+) False urad
XM_026937820.2 mRNA downstream 60084 17450723 ~ 17466452 (+) False lnx2a
XM_026937819.2 mRNA downstream 61525 17452164 ~ 17466452 (+) True lnx2a
XM_026938072.2 mRNA downstream 93054 17483693 ~ 17492318 (+) True usp12a
TU394792 other upstream 76297 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 76604 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 78290 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 78290 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 83247 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 596123 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 924717 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 924719 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 924721 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 925044 18315683 ~ 18323295 (+) True mtfr1

Expression Profile