RNA id: XM_034298219.1


Basic Information

Item Value
RNA id XM_034298219.1
length 2467
RNA type mRNA
GC content 0.51
exon number 5
gene id zdhhc23b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17390655 ~ 17397944 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTTAGTTGGCTACATGGAGCGGACATGAAGCGAATCGGAGGACCATGTGTGAGATAACGGCCAGCGTCCGGTCTGAGGGTATCCGCTGTGATACAGGTATACATCCTGGTGTAGACAGAGCGAGACATTTCGACTTTGGATAATGAATTCTTGCTGTATTTGTGTTCAGTAAAACCGAGGAGACTAGAATGTTTTCGCGCAGGGGAAAAAACGCGACCTGGCAACCTGACGGGCGGGTGCGCTTCCGTGGCTGAGCGATTTCCCAGCATGTCACATCGCCAAACACAGGTGAACGATGACCTTCTGAGGCTTATTGGATGAGCTGCCGTCCATCATGAAGAAGCGAGCCAATAAGGCGCTGGAGCTGGACGATCCTTTGTGCTGCTGTGAGTATGTGGATCGACATGGTGGGCGGAGTCACATGGCAGCGTGCTGCTGTGACTGTGAGGATCTGGACGAGGCTTGTGACAGATGGATGAAGAGAGAGCCCCAGAACCCGGACTCTCTATCTCGAGTGGCAGCCACGGTAACCGATCGTCTGCGAGTGCCCTGGATTTCAGGAGCTAAAAAAGTTGACCTGTCCTTGATCCCGCCTCTTATCCTACTTCCCATCCTCTTGCACATCGCTGCTCTGCATTACCTGCTGGGGATCATAGTGCTGACGGCGCTACCCGGCATGGTACTTTGGTATTACTACTTCACCCACCGCAAGAAAGGACGTACGCTGTTCTTCCTCAGCCTGGCACTGTTCTCCCTGTTGTACATGTACTACCTCTTCCTCACCGAGGTCATGCCGCGAGGCGACGTCACTAACCTACAGCTGGGGATCATCACGCTAGGCGTGGTGCTTACCCTCATAGCCCTCGTGCATACCAAGAAAGGGCCAGGCTACGTCAGACCCAGTCCTGCTGACACGCACAGCACAGTGACGTATCACAGCCCTCCCCCGGACGTAGACTCCGCCTACCACAACGGCTCACGGCATCAAGTAGTGATCGCCAATCGGACGAGTCCTGCTGAGCAGGGAGCTGAGCCCAGAGCTGTGGCAGGCAGCGTGCTGGAGAAAGACAGCAGCAGGAGGAACTGGTGTCCGTTCTGCAAGCTGGTGCAACCTCCAAGAGCCGGCCACTGCAGGATCTGCGGCGCTTGTGTCCTACGCCTGGACCATCACTGTGTCTGGATTAACAGCTGTGTGGGTCAGGCCAACCATCGCAGCTTCCTGCTGACACTCATCTTCTTCCTGTTGACCTCGCTGTATGGGATCAGCCTGGTTCTGCGCAGTGTGTGTCCCACCCAGAGCCTCCTGACCGCCTTGCTCTACTGCCCCGATGTCTACAGTCAGTCCAGCTCGGCCTTGTGCTTCACCTGTGCCTGGTACAGCAGCATCGTCACAGGAGGACTGCTCCACCTGCTGGTGCTGCAGCTGATCAACGTCAGCTACAACGTAACGGAGCGTGAGGCTCGGATCGCTCTGAGGGACAAAACGGGACGCAGTCTCATCTGGGGCCTTATCATCGACACGGGTGTGTACTCCCACGGCTTCCGCGCCAACTGGACTGAATTCCTCAACATGGGCGAGACTTTGGAGCCCAAAGCCCTGAAACCCACAGATCTGGTGTAGACTTCTGCTTAATGTCTGGCCTTAAAGAAGTGTGTGGAAGTCATGAAAAGCTGTCAGACTGAAGTGTTAAGCACGTGCAGATACACCACAGGcccaaaattttatttttctggttTCAACTGCGTGGCAGAAAGGTTTTAGTTATGTTTTTGTCCACTAGGTGGCAGcagtatattatatttcatcTGGCTATAACCAAATCACAATGCCTCATCAGTGCACCTCAGCAGTGAAGGAGTCTGGGTACAAGACTGTTCACCAGACCCAACATCTGTGAGTCCTAAGCCATATAAAGTACGCCCTGAGACCAtaactttcagagctgctgtgtgtctgtctcctCTGCCCAGAATGTAAAGTAGTGTTGTGTAGACATCATTTCATGATCTAGCTTGATTTAGTGCCTTGCTGGgacatgggagaaaaaaaacggAGACAGCACCACAATGCATTCTTGTCCAGAATTCCATCCGGCTATAAAACACCGACGGCGTCGCAGTGAATGTGCAATAACGTCCGACAGATGTTGTCAGAGGACGCTGTGTGCGTGTCTTGTGTTTTTATACTCCTCAAATGGAGATGGGTCTTTAATATATGTGTTAAACTGATAGTCAAGTTGCAGTGTTTAAGAAATCAGGTCAGAATGAACATATGGAGTTTCATCTCATTTTAACGCCttgttaaaaaacacacacaagcaaaaaaacaacttcacaGAAGAACACAGGTTTTGTCTGTTTTACCCAAGCAGTGTTTGTTCTGATCTGTGTACCATGATGCATCAGTGACAAGCTGCTCTAATTGATTGTGactcacaaaagaaaaaaaataaaagtttttgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395151 lncRNA downstream 542 17389862 ~ 17390113 (-) True G333657
TU395150 lncRNA downstream 914 17389454 ~ 17389741 (-) True G333656
TU395147 lncRNA downstream 5009 17385279 ~ 17385646 (-) True G333653
TU395146 lncRNA downstream 6632 17383742 ~ 17384023 (-) True G333652
TU395144 lncRNA downstream 9419 17380855 ~ 17381236 (-) True G333650
TU395207 lncRNA upstream 143921 17541846 ~ 17542352 (-) True G333700
TU395479 lncRNA upstream 501914 17899839 ~ 17902383 (-) True G333932
TU395481 lncRNA upstream 504708 17902633 ~ 17902855 (-) True G333934
TU395486 lncRNA upstream 507983 17905908 ~ 17906806 (-) True G333939
TU395528 lncRNA upstream 526566 17924491 ~ 17924789 (-) True G333971
XM_034298202.1 mRNA downstream 12648 17364641 ~ 17378007 (-) False qtrt2
XM_026938253.2 mRNA downstream 12648 17364641 ~ 17378007 (-) False qtrt2
XM_026938252.2 mRNA downstream 12670 17364641 ~ 17377985 (-) True qtrt2
XM_026938088.2 mRNA downstream 60998 17316520 ~ 17329657 (-) True kpna1
XM_034297896.1 mRNA downstream 80734 17305155 ~ 17309921 (-) True ccdc58
XM_034298240.1 mRNA upstream 2435 17400360 ~ 17415956 (-) False gramd1c
XM_034298237.1 mRNA upstream 2435 17400360 ~ 17415956 (-) True gramd1c
XM_026938190.2 mRNA upstream 2435 17400360 ~ 17415955 (-) False gramd1c
XM_034298239.1 mRNA upstream 2435 17400360 ~ 17415101 (-) False gramd1c
XM_026938149.2 mRNA upstream 37148 17435073 ~ 17440510 (-) True pdx1
XR_004576994.1 other downstream 151549 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 250970 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 510771 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 510772 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2324845 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 509969 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 512013 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 527150 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 981111 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 981724 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile