RNA id: XM_026938222.2


Basic Information

Item Value
RNA id XM_026938222.2
length 3129
RNA type mRNA
GC content 0.41
exon number 8
gene id trim55b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18380291 ~ 18390865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCTGTGTGTGGGGTCAGGAacacacagtgaggaaaccacgccaccatacaccatacacaGTGTGATCAATTATAAAGCCACTGTGCAGAGAAGATCACTGTGTATAGTTTActtctcatctttctttcttttttttctttttttttttggaccatGGACATTTTggagaagcagctgatttgtcCAATTTGCCTGGAAATCTTTACAAAACCTGTAGTGATTCTGCCATGCCAACACAACCTCTGTCGGAAATGTGCAAATGACATATTTCAgGCGTCAAACCCATATCTTCCCACCAGAGGAGGGTCAGTGACTTCAGGCGGCCGTTTCAGATGCCCATCCTGCAGGCACGAGGTTGTTCTGGACCGCCATGGGGTTTACGGACTGCAGAGGAATCTTTTGGTGGAAAACATCATTGATATGTACAAACAGGAATCCACCAGTAGCAGACCTGCTCCAGAGAGGACAGATGACCAGCCCATGTGTGAGGTGCATGAGGACGAGAAGATCAACATCTACTGCTTGACCTGCAGCATCCCTACCTGCTCCTTGTGCAAGGTGTTCGGCTCTCACAAGGACTGTGAAGTGGCACCTCTCAAAAATGTATATCAAGTTCAGAAGACAGAGCTGACAGACAGCATAGCAATGATGGTGGGCAACAACGACAGGATCCAAGGCATCATTAGTCAATTGGAGGAGACCTGCCGGGCCATAGAGGAGAATGGCAGGAGGCAAAAATCACATGTGTGTGAGAAGTTTGACCACCTCTATGCCATCTTAGAGGACAGAAAAAGGGAGATGAGTCTCAAAGTGACAGCTGAGCAGGACGAAAAGCTGAACTACATCCGTGGACTCAAGAGGAAGTATGAAGATCACCTGGAGAACATGACCAAGATTGTGGAGTCAGGGATCCAAACGATGGAGGAACCAGAGATGGCTGTTTTCTTACAGACTGCAAAACCTTTGTTACAAACGATGAGCGAGGCCACGAATACATCCCACTTGGAAAAAGTGGAGCGTGGCTACGAGAGCATGGACCATTACTCCATTGACTTCAAGAAAGAACGTGGCGCTTTAAGTGCTATAAACTTCATCACAGatgaagatgaagaagaggaagatggaGATGTAGTGGGAGCAGAGAAAGAAGTCCACAAAGAACAGGCTACTTCAGGAGGAGCAAATGCAGGGTTGCTGAGCAGCCAacctgctcctcttcctctgcctCCAAATCCAGTCAAAAACACCAGCTCATAGCTCTCCAACTTCAGAATTTATTGCAGTTTACAGATTtcaatttgtatgaaaagtaACAAAAGTTAAGTTGACGATTAGGGGTGGGGTtaacatttgtctttttttaacatagtaAATTCACCTACATCTTCTTCACTAGTACAGATACATCCATCAAAGGCTTGATTTAGTGTCTACATGTGTAAATGTTCAGGCACTTATAACCTAATGAGTTATTGATAGTGATGAAGCTTGAAATATGCAGAAGTCACAACATCTACAGCCATGGCATTTGCAATATATGACCTCTTGCTATACAGGAAACTACCCTGAAAAGACAATCAGactaaacatgaataaaattcacccGACACAAAAgacaattcactgaaggggaaaggacgcggGATGTGAAAGACACAAATTACTGTAGCGCCGGTTTTATCTTGGTGACCAGTGAATTCACAAGCTTCGGTCTTGTGAGGCAGGACAGTGGTCTCTTTGGTcggaaaaaattttttttggagGAGCCTCTTATCACTGACTCATGCTCACACAGGACTTTTGCGTTGACATTTCCTAACCCCACAcctggggattttttttttattttgttgtctCGTCTAATATAATGCTAGGGTTTAAAAGGGGGTAAAATTAATCTTTTCCTTTGGTAGAATTTGCTAGAATTTTCTTGTTAGCACTTCTGAATATGGTATACTTCACAGATAGCTGATTTTCCCTGTTTttatgaactgaaaaaaaagactagCTATAAATCATAGTGGATTGGCACagagtttgtttttgtgtgatatTTTTACTCAAGTCGGCACCATCagactgtttattttaaaagtgaCAAGATCTCCTTTTAACGCATGCTCATTTCCAATGTCACTGATGTAGAATATAACATGTTTCAGTCATTCATGTTAATTTCTCCATGAGGGAATGAGGGAATGGGGTTTTCGTTATCTCTAATGCTGATTGTAATGAGGTCCAGAGATCTGGGAAAACCCTGTCCCTATGGTCTGATGTTTGTTAGCACTACTCACCTTGGtcagctgtggtataaatgcaaTGTCTgagtgatgaagtgctttgtccTGGTTTGTCTAACTGCAGTGAAGTAGATTTGACAGAACTCATGCAAACTAAAATCCAATGCTTGTCCTCACAGAAGGTCTCCAGTTGCTGTGTAGGGCACAATGAATCACACCAGCTAATTTGATTGTGTTGACCTCAGGTCAAGGAGCACAGCGTGAACATATAGTAATTACAACAGCCTGTATTTAATAGTATAAAGAGTTCAGAGGATTTTTCCCAAAAATGGAAGGAATTTTGGTTCTATACTCCACTGTGACAGTTCTATCAGGAACAGGATGTTCTGAAATGACAGATGATAATGTGAGTCGTTGTtacaaaaaaatccagatgtgATTTATTGGGACTGAAATTCGATGCTTTGTGTAGCAGCTTTTTAGGGCAATTCAGTTTTTCCCCCAAAGATGTGCTTTCTTCTGCATGTATTGTGCACAGATTTGCTCTCAGAGGATTTATCTGTGGTTTGGATGTGAGTTGCTAAAATGACCCATACAATGAAGGCTGGAAAGATTTAGGACATGATTTCTTAAAATATCTCAAAGTCTCAAATATCCCATTTATATGCAAGTATTTCTATTTACTGGTCAATTTATTGATGGCTTACCTTCCAGTGAAagtgtaaatgcataaaattatgtgGGTTGTGTATCTGCTTATCTTTCTGATGTGTCAAGTGTGTATTCACACACTCAGGACTGAGTCACGTTGTTTTGCTCTTTTCAGGGATGTAATGACTTGGACAAGAGCAGCCAagagaatatttaataatatttcagtattatGAA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10654 TRIM55, MURF2; tripartite motif-containing protein 55

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395716 lncRNA upstream 55406 18296643 ~ 18324885 (+) True G334120
TU395714 lncRNA upstream 55467 18302862 ~ 18324824 (+) False G334120
TU395656 lncRNA upstream 176611 18203063 ~ 18203680 (+) True G334077
TU395657 lncRNA upstream 177386 18200395 ~ 18202905 (+) True G334078
TU395608 lncRNA upstream 271487 18085319 ~ 18108804 (+) True G334032
TU395829 lncRNA downstream 44856 18435721 ~ 18437406 (+) True G334209
TU395830 lncRNA downstream 48284 18439149 ~ 18439446 (+) True G334210
TU395831 lncRNA downstream 49390 18440255 ~ 18440656 (+) True G334211
TU395842 lncRNA downstream 83819 18474684 ~ 18478739 (+) False mcmdc2
TU395840 lncRNA downstream 109918 18500783 ~ 18530907 (+) True G334219
XM_026938225.2 mRNA upstream 2095 18372722 ~ 18378196 (+) True dnajc5b
XM_034298031.1 mRNA upstream 56996 18315354 ~ 18323295 (+) False mtfr1
XM_026937924.2 mRNA upstream 163085 18214863 ~ 18217206 (+) True bhlhe22
XM_026938136.2 mRNA upstream 282376 18087647 ~ 18097915 (+) True ythdf3
XM_026938188.2 mRNA upstream 396871 17973204 ~ 17983420 (+) True lipib
XM_034298263.1 mRNA downstream 5362 18396227 ~ 18432150 (+) True si:dkey-97a13.12
XM_026937814.2 mRNA downstream 19771 18410636 ~ 18432150 (+) False si:dkey-97a13.12
XM_026937813.2 mRNA downstream 30121 18420986 ~ 18423560 (+) True rrs1
XM_026938083.2 mRNA downstream 62242 18453107 ~ 18467245 (+) True sgk3
XM_026938084.2 mRNA downstream 62521 18453386 ~ 18467245 (+) False sgk3
trnaa-agc_16 other upstream 277 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 917 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576961.1 other upstream 56996 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other upstream 56996 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other upstream 56996 18315360 ~ 18323295 (+) False mtfr1
TU396015 other downstream 302284 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 948341 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 948341 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 948341 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 948341 19339206 ~ 19360737 (+) False dap

Expression Profile