RNA id: XM_026938229.2


Basic Information

Item Value
RNA id XM_026938229.2
length 6479
RNA type mRNA
GC content 0.52
exon number 39
gene id arfgef1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16220089 ~ 16274511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcactcgctcgcGCTCTCTCCGTGACGTCGTTTCCGCCCAACATGGCGCAGGCTGGTTGCTAATGGAGAACTGAAGGATATTTTTCTCCTCTCCGCACCTTTCTGCCTTTATTTATGTTTCTCTCCTCAGGCTGAGCGTTCACAGGCCGCTTCGAAAAGGGCATTTATCTGTGTGTCAGTGACGGCTTGTCCTCCTTCGGTCCATCTTCTCCTCGGACCTTTTCCACCGCGTCATGTATGAAGGCAAAAAGAcgaaaaacatgtttttaaccCGAGCTCTGGAGAAGATTCTGGCCGATAAGGAGGTGAAGAAGGCGCATCACTCCCAGCTGCGCAAAGCCTGCGAGGTAGCGTTAGaggaaataaaagcagaatcGGAGAAATTAAGCCCCCCTGCTGGAGATAGCAAGTCGAGTTCCAGTACCCTGCCTCCCATAAAATCCAAGACCACCTTCATCGAAGCGGATAAGTACTTCCTGCCGTTTGAGTTAGCCTGTCAGTCCAAATGTCCCCGCATCGTCAGCACATCACTAGACTGTTTACAGAAACTCATAGCTTATGGTCACCTGACGGGCAGCGCCCCGGACAACACTGCCCCGGGGAAGAAGCTCATAGACAGGATCATCGAGACGATCTGCGGCTGCTTCCAGGGCCCACAGACCGACGAGGGAGTTCAGCTTCAGATCATAAAGGCCTTGCTGACAGCGGTGACCTCCCAGCACATCGAGATCCACGAGGGCACGGTGCTGCAGGCCGTCAGAACCTGCTACAACATCTACCTGGCCAGCAAGAACCTCATCAACCAGACGACAGCTAAAGCCACGCTCACTCAGATGCTCAACGTCATCTTCGCCCGCATGGAGAACCAGGCACTCCAGGAGGCGAAGCAGATGGAGCGGGAGAGGCACAGGCAGCATTCGCCGCTCAGCCAGCAGGAGCCTGAGTCTCCACAGCTCCAGCAGCTTCCAGACACCCCGGCCAAGAGCCAGAGCCTGTCAGGTCAGGAGGTCAACGGAGGGTCAGGAGTGGAGGGCGGTACCGCAGAGCGTGAATCGCCCCACTACGAGAGCCCGGAGCCCGAGAACGGCTCCGACTTCGGCCCTGTAGAGAACGAACAGACAGAGGCGGACCAGGCGACTGCAGCAGAACAGAGTGCAGCCGAGCGTGGCTCGCAAGCTCCTGAAGAAGAGGAGAGCCTGAATTATGAGGAGAAGGCTCAGGAAATTGTGCAGAGTATACTGCAGGAGGTGGTCAGCACTGTGGCTGGAGatgcTAAAGAGAGTGGAGGAGGGGAGGTGGAGCCAGAGGCCACGCCTACATCGCTGGAGGAGGAGGGTGGCCTGAGCAGCGACAGTGAGAACGTCCACGCTAACGGCATCCCTGGCACGCCCATCTCTGCCAGCTTCACTCCGTCCCTGCCTGACGACAGACTGTCTGTCTCCTCCAGCGACACTCAGGAATCTGGTGCTCCAGCGGGGCCTGCACCGGGTGCGAAGTTCTCGCACATTTTGCAAAAAGACGCCTTCCTGGTGTTCCGCTCCCTCTGCAAGTTATCCATGAAGCCCCTTTCAGACGGCCCACCCGATCCAAAATCCCATGAGTTGCGCTCCAAAGTGCTCTCGCTGCAGCTGCTGCTCTCCATCCTGCAGAACGCAGGCCCCATCTTCAAGACCAACGAGATGTTCATCAACGCCATCAAGCAGTACCTTTGTGTGGCGCTGTCCAAAAACGGCGTCTCCTCCGTCCCCGAGGTCTTCGAACTCTCCCTGTCCATCTTCCTCACGCTCCTGTCCAACTTCAAAACCCACCTCAAGATGCAGATCGAGGTCTTTTTCAAAGAGATTTTCCTGTACATCCTCGAGACGTCCACGAGCTCATATGACCACAAATGGATGGTTATTCAGACGCTCACCAGAATATGTGCAGATGCCCAGAGTGTGGTGGATATCTATGTGAATTATGACTGTGACCTGAATGCTGCTAATATatttgagaggctggtgaacGACCTGTCCAAGATCGCACAGGGCCGAGGAGGCCATGAGCTGGGCACGACCCCGCTGCAGGAGCTGACTTTGAGAAAGAAGGGACTGGAGTGTCTCGTCTCAATCCTCAAGTGCATGGTGGAGTGGAGTAAGGATCAGTACGTGAACCCTAACTCTCAAACCAGTCTCGgccAGGAGAAGCCTTCTGAGCAGGAGGCCAACGAGTCCAAGCACCCAGAGACCATTAACCGCTATGGCAGCATTAACTCTCTGGACTCCACAGCTTCCTCGGGCATCGGCAGCTATAGCACGCAGATGTCTGGCACCGATAATCCAGAGCAGTTCGAAGTGCTCAAACAGCAGAAGGAAATCATTGAGCAAGGCATTGACTTGTTCAACAAGAAACCAAAGAGGGGCATCCAGTATCTGCAGGAGCAAGGCATGCTGGGAACAACGCCAGAGGACATCGCTCAGTTTTTACATCAGGAGGAGAGGCTGGATTCTGTCCAAGCTGGAGAGTTTCTGGGAGACAACGATCGCTTCAACAAGGAAGTGATGTATGCCTATGTGGACCAAATGGACTTCCAAGGGAAGGACTTTGTGTCGGCCCTGCGTCTGTTCCTGGAGGGCTTCCGGCTCCCTGGAGAAGCCCAGAAAATCGACCGTCTCATGGAGAAATTTGCTGCTAGATATTTAGAGTGCAACCAGCGacaaACTCTGTTTGCGAGTGCAGACACAGCGTATGTCCTTGCTTATTCAATCATCATGTTGACTACAGACCTTCATAGTCCACAGGTGAagaataaaatgacaaaagagCAATACATAATGATGAATAGAGGGATCAATGACAGTAAAGATTTGCCGGAGGACTATTTGTCATCCATCTACAATGAAATCGCAGGGAAGAAGATATCTATGAAGGAGACGAAGGAATTGCCACTCAAATCTAATAAACAAAGTGTGGCCAGTGAGAAACAGAGACGGCTGCTGTACAACGTGGAGATGGAGCAGATGGCGAAGACAGCTAAGGCTCTGATGGAGGCTGTGAGCCACGTTCAGGCCCCATTCACCAGCGCCACCCACCTGGAGCACGTCAGGCCTATGTTTAAGCTGGCCTGGACACCGTTCCTGGCGGCCTTCAGCGTGGGTCTGCAGGACTGCGATGACACAGAGGTAGCATCTCTGTGCCTGGAGGGTATCCGCTGTGCCATCAGAATAGCCTGCATCTTCTCCATACAGTTGGAGAGAGATGCCTACGTGCAGGCTCTGGCTCGCTTCACCTTGCTCACAGCCAGTTCTGGGATCACGGAGATGAAGCAGAAGAACATTGATACTATCAAGACACTTATCACGGTGGCTCACACTGATGGGAATTACCTGGGAAACTCGTGGCATGAGaTTCTGAAGTGCATTAGTCAGTTGGAGCTGGCCCAGCTCATTGGAACAGGGGTGAAGGCTCGCTACATATCCGGGACTGTTCGGGGCAAAGAGGGCCTCATCACTAGCACCAAAGAGCAGAGTCCAGACGAGTATCTGGGTCTCGttggTGGGAATGTAGACCGGAAGCAGATCGCTAGCATTCAAGAATCCATTGGAGAGACCAGCTCTCAAAGCGTTGTGGTTGCTGTGGACAGGATATTCACAGGATCCATTAGATTGGATGGTAATGCTATAGttgatTTTGTGCGTTGGCTGTGTGCTGTGTCCATGGACGAGCTGGCCTCTCCGACCCACCCGCGCATGTTCAGCCTGCAGAAGATTGTGGAGATTTCCTACTACAACATGGGCCGCATCAGGCTCCAGTGGTCCAGGATCTGGGAAGTGATAGGAGATCATTTCAATAAGGTTGGCTGTAATCCCAATGAGGATGTTGCTATCTTCGCCGTGGATTCGCTCAGGCAGTTGTCCATGAAGTTTTTGGAGAAGGGAGAACTGGccaatttcagatttcagaagGATTTCTTGAGGCCGTTTGAGCACATCATGAAAAAGAACAGATCGCCCACTATCAGAGACATGGTGGTACGCTGCATAGCTCAGATGGTGAACTCGCAGGCGGGGAACATCCGCTCAGGCTGGAAGAACATTTTCTCTGTGTTCCACCTGGCAGCCTCGGATCAGGACGAGAGCATCGTGGAGCTCGCCTTCCAGACCACTGGACACATTGTCACGAATGTATTTGAGAAGCACTTTCCTGCCACCATCGACTCCTTCCAGGACGCCGTTAAGTGTCTGTCAGAGTTCGCCTGTAACGCTTCGTTCCCTGACACCAGCATGGAGGCCATCCGTCTGATCCGCCACTGCGCCAAATACGTCTCCGACAGGCCTCAGGCGTTTAAAGACTACACTAGTGATGATATGAATGTAGCCCCAGAGGACCGGGTGTGGGTGCGAGGCTGGTTCCCCATCCTGTTTGAGCTCTCCTGCATCATCAACAGGTGCAAGCTGGACGTCAGAACCAGGGGTCTGACGGTGATGTTTGAGGTGATGAAGACGTACGGTCACACGTACGAGAAACACTGGTGGCAAGACCTGTTCCGGATCGTCTTCAGAATTTTTGACAACATGAAGCTTCCGGAGCAGCAGACCGAGaaagCAGAGTGGATGACCACAACCTGCAACCACGCACTTTATGCCATCTGTGACGTCTTCACGCAGTACTTCGAGTCTCTCAGTGATGTTCTGTTGGACAACATCCTCTCTCAGCTCTACTGGTGTGTGCAGCAAGataaTGAGCAGCTGGCAAGGTCCGGAACCAACTGCTTGGAGAATGTAGTGATCCTGAATGGAGAGAAGTTCACAGCCGAAACCTGGGACAAGACGTGCAACTGCATGCTGGACATCTTCAAGACCACCATCCCACACACGTTGTTGACGTGGAAGCCGGCTGCTGGTGGAGACAACGATCATGTGACTCAGCAGGACTCGGACAAACAACTGGACTCCATGTCCCAGAAGTCTGTGGACATCCAGACCCGAGCAGAGGACCAACACTCTGTGAGCAGTATGGAGAAGGCGCTGGCAGAGAATCGGAGACAGAGTCAGTTCAGTTTGTCTTCAGAAGTCCAGGAGCAGAGGCTGTTTGCAGCACTGCTCATTAAGTGTGTGGTGCAGCTGGAGCTCATCCAGACCATCGACAACATCGTCTTCTTTCCGGCCACCAGCAAGAAGGAGGACGCTGAGAACTTCGCAGCAGCACAGAGAGATGCTCTGGATGCTGACGTCCATGTGGAGACACAGGATCAGGGAATGTACCGCTACCTGACCTCACAGCAGCTGTTTAAACTGCTGGACTGCCTGCTGGAGTCGCACCGTTTCGCTAAAGCCTTCAACTCCAACAATGAGCAGAGGACAGCGCTGTGGAAGGCTGgttttAAAGGGAAGTCCAAACCCAACCTGCTGAAACAGGAGACGAGCAGCCTGGCCTGTGGCCTGCGCATCCTCTTCCGCATGTACACAGACCCGAGCAGACAGGACGCCTGGGAGGAGGTGCAGAGACGCCTGCTCAAtgtgtgcagtgatgcCGTGGCTTATTTCCTCACACTGACATCCGAGAGTCACCGCGAGGCCTGGACCAACctgctgctcctcttcctcaccaAAGTGCTGAAGATCAGTGATGACCGGtTCAAGGCCCACGCCACCCGTTACTACCCGCTGCTGTGTGAGATCATGCAGTTTGACCTGATCCCTGAGCTGAGAGCCGTGCTGAGGAAGTTCTTCCTGCGCATCGGGCTCGTGTTTCACATCGCTCACGCGCTGGAACCGGAGCAGGAGGCCTAGAAACGGCCACTGAAATCGTCCCTCGTTCTCCTTTTATCTGCCGTCCAACTGGTTTAGGATCGTGATCTAATCTCTCCCCAAACGAAGGGCACTGTGGAGGCCCTGAAAGGATGCGACTGGAAGCTTCTACAAGAGCATCTTGATGgtacttgttagcaacattcTAGACTAGACTGGGTCTAGACTGGAAATAATCGTGGGCATGTACAAGACTCGTAATCATCTACAGGATCCGGATTACAGTAATGACAACTATCCAACTCCTCGACATCTGAGATCCTGAGTAAATTTCAAAACAGTGTGTCACTTTGTTTCAACATAATCCTAAAGCTGTATGAAGAATGATGAAAGGGGTCACCATCGAGTAAACGGTTAGTAATTAGTTCGGATAAAGAGTAACTGCTGTTACTCTACTATTCTAATGTCCTTTTCGGTTTTGCACCGCTAATGGCTAACATTAGCTTGAATAGCTCCTTGAATTGATCTAGTTGTACAGAAGAGCGGCTTGTAAAATAATCCCATAACACtagattttatttctaaatcttTTTGGTTTCTCTGAATTTGCTGCACTCGTTTTCCTTTTCAAATGCACTGGAGATTTTTACTTTTGTGATAATTTATTTAACTATGCCATCTCTCCCAGATTGTCCAATAAGATTTCTAATTGATACCATatcaactatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576975.1 lncRNA downstream 148591 16060280 ~ 16071498 (-) True LOC117595797
TU394080 lncRNA downstream 178577 16041312 ~ 16041512 (-) True G332797
XR_003404166.2 lncRNA downstream 234981 15979116 ~ 15985108 (-) True LOC113541293
XR_003404161.2 lncRNA downstream 276900 15935828 ~ 15943189 (-) True LOC113541266
TU393962 lncRNA downstream 589645 15630223 ~ 15630444 (-) True G332682
TU394284 lncRNA upstream 37533 16312043 ~ 16312879 (-) False cpa6
TU394528 lncRNA upstream 346248 16620758 ~ 16622013 (-) True G333175
TU394562 lncRNA upstream 364654 16639164 ~ 16640767 (-) True G333197
TU394831 lncRNA upstream 462658 16737168 ~ 16760431 (-) True LOC117595808
XR_004576992.1 lncRNA upstream 475038 16749548 ~ 16760423 (-) False LOC117595808
XM_034297866.1 mRNA downstream 19638 16145537 ~ 16200451 (-) False relch
XM_034297865.1 mRNA downstream 19638 16145537 ~ 16200451 (-) False relch
XM_034297864.1 mRNA downstream 19638 16145537 ~ 16200451 (-) False relch
XM_034297863.1 mRNA downstream 19638 16145537 ~ 16200451 (-) False relch
XM_034297862.1 mRNA downstream 19778 16145056 ~ 16200311 (-) True relch
XM_034297874.1 mRNA upstream 6761 16281271 ~ 16312916 (-) False cpa6
XM_026938123.2 mRNA upstream 6761 16281271 ~ 16312915 (-) True cpa6
XM_034298006.1 mRNA upstream 413212 16687722 ~ 16699950 (-) True csrnp1b
XM_026937809.2 mRNA upstream 520500 16795010 ~ 16801971 (-) False LOC113541039
XM_026937808.2 mRNA upstream 520500 16795010 ~ 16801971 (-) True LOC113541039
TU393587 other downstream 1154279 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 1282685 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 3542156 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 3542156 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 5136938 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 556186 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 556186 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 841588 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 911014 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 1633384 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile