RNA id: XM_026938234.2


Basic Information

Item Value
RNA id XM_026938234.2
length 4105
RNA type mRNA
GC content 0.51
exon number 29
gene id LOC113541322
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16200496 ~ 16219013 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGATTGGCTGAGCAGTTCGGACTCAAAGAAGCCCGCTGATTGGACAGCTAACAAGGTGTTcacatcaccatagcaaccataTAGCACTACAAGTGACTGGATCAACGCGTCCGCCATATTGGCAGGTCAGATTGGAGTGTTCAATTCTCAGCCATGTAAAACCATGCGGATAAAAAACTCACAAACTCTGTCAAGCTTTGGTCAAAATGCAGAGGAAACTGAGCCTCCTGGCAAAACCACGTCACAGACCAAACAGAATAAAGATGACGGATATGGTTTAAGTTTGCAGCTGGGAGAGGAGTATGAGAGGAAGAAGCAAAGGCTGAAGGAAGAGCTTCGTCTGGATTACAGGCGCTACGTGTCTGAGAAACAAAATGTCGATATCAGTGAGCCATTCTCTCAACAACAAAAACTGTCTCTGCCCACAAGAGAGAGAAGATCTACTAAaGACAAGTTGCAAGATGAGAGGATTAAAGACTACAGTCCGTTACTCCGAGGAGACGAGGAAATACAGAAGATAAGAAAAACTTCAAATGCACCACAGGCCCTTGGAAAAGATTATTTCATGTCCACAACTTCATACCATCCATCGTTTTCTCCAAAACCACGAGGACGGAAGAGTCCAGAGAGGGTGCAGTATTCCAAGAGGGACAACCCGACTGAACCTGTGCCCAGCACTGCCCTGACGCCAGCGCGAAGAGGTGCAGAGGACATACCCAAACGCTGGCACAGGAGGTCCAGGAGGGAGCGCTACAGCTCTGAGGAGGAGCTGAACTCTGATGAGGAGGAACAAGAGGAGCTTGAGCTCCTGCAAAAGAGGAGGCCAAAACATCGAACTGAGTCTGTGCTAGCTGGCAGGAGACACAGAAAACTCCAACACAGAGCTGATAGGTTAACTCAGGAGAGAAGAGAACTGGAGGTTCCTTCTGTTAATGAAGAGGACCATCAAGAGGAAAACAGACGGACTCCACTGGCACCGATTAAAGCCAATCCACTTGTACCAGCACAAACCAGAGCTGCGAACAAGAGGAACATGACAGATTTTGCTACAGGACTTATGATTGGGGCTGCTGAGGGTGAGGAGGCTGTTCAGAGAAGGAAGGAGCGCTATAGACAGGAGCTGCTGGAGCAAATGGCTGAACAGCGGAGAAATAAGAGAAAGGAAAAGGAGCTCGAATTGAGAGTTGCTGCTACAGGGGCTATTGATCCAGAGAAAGAGtATATGACCGTATACCTGCCTGGTCTCCCACAGCCTGACAGGATTAAGCAGTTTGGTGCTGTAAGAAGGGAGCATGAAGGCAGGAGACGGGATGTGCCCTACAAGCCCGGAATAGGACTGGACACCCTCGGGGCAGACGTGGACAAGAGGTCACAAGAAGTGGAGAAAGAGCCGCCTGAGAGACCCCGTGTGGCCTTCCAGTCTCCTATTCTGGAATACAGCGCCGCTCTGGGGCACCTGGGTAACACGGCGAGCACTGGAGTCGGGAACAGTGGCGTCACAGCCTTCAGTGAAAACTTTCACAAAGACCTCTCAGGAACTATTGGAGAAATGGTTGCCCCCAGAGTTGCAAGAGTTCCTCCTCCACTGGCGCCCACCCTCTCTGAGGCATACAGCACTCCATACGATGAAGCCTACTATTACTATGGAGCCAGGAATCCCCTAGACCCTAATCTGACTTACTaTGGACCTCCAGCAGTGCAGCCATCACCTAATCTCCCAGCCGGAGCACTTACACCTGTCCGTCAGCCTCCCGCTGGAGTCTTTGCACAaccAGCTCCACAGCATGGCACTTATCCTTCTGGAATTGGGACTGGAGCATATCCTTCTGATAGGCAACAACATCCCAAGGACCAAGTTCTAAGCTACAAGGATGCACTTAAACAACAGATTGAAGAGAGGCAGGAAAGGAGGAGAcgggagaaggaggagaaggaacGGTACGAGGCTAAACTGGAGGCAGAGATGAAAGCCTATGAGCCGTGGGGAAGAGGAGGAGCTGGGGCTCCACTTAGGGATGACCGAGGAAACCTCATCAGTGATCTAAAGCGTATGCACAGGACTAATGAGGAGGCCTATGTGAACCCAGAATCACGTAACAGAAGAGCCATAGCATCGGTGGATTGGACTGGAGCTACATCAAGAGCAGAGGATAAGGATTCTTCTTTACACAGAGTTTCAGATAACAAAGTTTCCTCCTTCACCCGGCCCTCACCACACGCGCGAGGAAACGTGTTCAGTGAACTCCCGACACCACAGCAGCTCCGCGAGCAGGAGATATACAAGGAAAGTCTCAAACAGCAGATAGAGGAGAAGCGGAGGATGGaggcagagaggagagagaggctgaggctggaggaggagaaggaggagaagaggcTGGCTGAAGAGAGAGCGCACATGCAGAGGCAGTttgaggaggagcaggagaaggAAAGACGCAAGGAAATGGAACAAAACGCCAGAAACCAGGAGATGATTCGGCAAGCTGAGGAGCGGCGCAAAGAGGCCgaaaagaagaggaaggaggaagaagagaaggcGAACGAGGCATTGAAGCAGCAGTACGAGCAGGAAAGGCTAGCCCGGCTGGAGCAGGACTTCAGGTCTCATTCACCACCCATCCCTGCAATACAAAAGAGACTGGGCCAACAGATTCCTCCCAGACCGCCTTCAGTCGACAGCCAACGGTCAGCTACAGCTTTCTCTGTTCGGACTATTTCCACTCCCCAGTCCCCACCTGTTCCTGCACGGAGGAACCAGATCAGAGCAGCAGagGAACAGCAGGGTGTGATCAGGGAGTTGTCAGTTCTGCGTAGACACCTCAGAAGTGAGCAGAAGCGGCTTGAAGGGCAGCTACTACAGTCAGACAGAGAGGATACACAAACTCCCTTGAAAAACAGAGCGCAACCTCTATTGAACGCCTTTGACATGGCCAGGCTGCGGATGCAGGTGCCTGTAGGGAGACCATCTTCAAACACCAGACCACTGAACAAGCAGATCATGCAGGACTTCAACCAGCTCAAGTACAGAGACACAGAGTCTCGTGAAGAAGTGAGGCAAGTGTATCCAGAACCACCCACTGATGAGGCCAGCCTGGAGATGCAGCAGCAGGCTCTGCTCCGAGAGCAAAAGCGGAGACTCAACAACATGCAAAGAGCCAGAGCCGTCGATTACTTTGACCTGTCATCTCCCATGAAGCCTGCTCCTTGTCGGAGGAACAGCTGTGTCGAAGAGGCTGAGAGAAACACGCTGTTAGAGTCTGAGAGTGCTTTTATTGACGCTAACGGTTATTCTTTCCCGATAACACCGCACTCTGATCGAATCTCTGCTAGAGAGAGAAGACGGCGAGCCAGGAGGACAGACTTTCCTGATGGTGTGAAGACCCCCAACGGAGAGAGGATCAGCTATTCCCTGGGCTCAGCAAACAGCTTCCAGCTGGACCGAGTGCGAGAGCTGAACCAGCGCAGGATGAGAGTGTTGGATGACATGAGCGAGAAGGACCGGAGAtcagGAGAAATATCtgctgatgaagatgatgaccTTTGGCAGCAGACTCCATCTCCACCCCCTGCCCGCCGTGTTTCCACAACAACCGTCACCACGGAGGCCTGGCTCCGCCCCGGCACCACAGAGACGCTGAAGAAGCTGATGGCAGGTCGAAGGCCATCCAGCCGCAACCTGCCGAGAGACGAATGGGACGCACCGTCCACTTACCACGGCTAGCGCACATTCACGGTCttattttaaaccaaaatggGGTGagagaaatttgttgcatgtccTGGTTTGTCTGTCGGTTGTGTTTTGGCTTTGCTGTCGATATAACAGTTGCACAGGCCACATGGGTCTGAAGCCACAAATGAATCTCTAGAGGAGCAGAGCTTCACCaacgtgtgtgtgcgcgcgtgcgcgtgtgtgtgtgtgtgtgtgtgcctgcctCCTGCCAACCAGCAGTGCCTGAAAGGTTTTACTGCACACTGTTGCTCTGGTACAAATTAATATAGATGATTAACTTGTCTTTATACATTTGATGTATGtataataaatgattataagaatgtattttacagtattttaaatatgaaataaattatttttggaG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394074 lncRNA upstream 97899 16102271 ~ 16102597 (+) True G332791
TU394073 lncRNA upstream 98284 16101750 ~ 16102212 (+) True G332790
TU394071 lncRNA upstream 158909 16041384 ~ 16041587 (+) True G332788
TU393930 lncRNA upstream 583262 15592088 ~ 15617234 (+) True G332650
XR_004576951.1 lncRNA upstream 620698 15570863 ~ 15579798 (+) True LOC113541248
TU394160 lncRNA downstream 540 16219553 ~ 16220945 (+) True G332859
TU394510 lncRNA downstream 376768 16595781 ~ 16620089 (+) True G333157
TU394501 lncRNA downstream 386135 16605148 ~ 16633783 (+) True G333148
TU394614 lncRNA downstream 513903 16732916 ~ 16829979 (+) False G333232
TU394612 lncRNA downstream 552990 16772003 ~ 16829979 (+) True G333232
XM_026938236.2 mRNA upstream 103725 16076891 ~ 16096771 (+) True hephl1a
XM_026937826.2 mRNA upstream 570531 15620148 ~ 15629965 (+) True panx1a
XM_034297849.1 mRNA upstream 585605 15587302 ~ 15614891 (+) False tpk1
XM_026938048.2 mRNA downstream 107972 16326985 ~ 16443144 (+) True prex2
XM_034298091.1 mRNA downstream 133761 16352774 ~ 16443144 (+) False prex2
XM_026937906.2 mRNA downstream 225650 16444663 ~ 16529117 (+) True c22h8orf34
XM_034298094.1 mRNA downstream 318640 16537653 ~ 16632052 (+) True sulf1
XM_026938283.2 mRNA downstream 420092 16639105 ~ 16684971 (+) True LOC113541353
TU393912 other upstream 633833 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 935909 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 2815222 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 2942080 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 3487818 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 888459 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 888459 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 1066069 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 1068147 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 1068147 17287160 ~ 17295054 (+) False G333388

Expression Profile