RNA id: XM_026938236.2


Basic Information

Item Value
RNA id XM_026938236.2
length 3996
RNA type mRNA
GC content 0.46
exon number 19
gene id hephl1a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16076891 ~ 16096771 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGTTTCGTGTTGTCAAGCCAGCTGAGCACTCAGCGCGGATTTTCTGACTCCTGGctccacactctcacacacaaacacacactctcacacacacacacacacacacacacacagagccaaaaCTCCGGGCAGAGCGGCTGCGTGTTTGTGCTGCTTTCATCCGcttttcattttcctcttcaAGCAGCTCATCTGCGATTCTTCCTACAATGAATGCAAGCTTTTGGACTTTGTGTCTGACATTTCTGACCATGCACGATTTGTGCAAATGTCTTCCCAGGATATATTACATCGGGATTCGTGAGGTGGACTGGAATTACGCACCAAGCGGACGGAATCTGATCAATGGCATGCAGATCAAAGACGACGAGCATGCCTCTACATATCTGGTCAGAGGTCCATCCCGGATTGGTAGTGTATACAAAAAAGCCGTGTATATGCAGTACACAGATGAGACTTTTTCTACTGAGGTCCCTAAGCCAGACTGGCTCGGTTTCCTTGGACCCGTGATCCGTGCAGAAGTGGGTGATGACATCGTGGTACACATGAAGAACTTTGCATCTCGACCTTATTCAGTCCATCCTCATGGAGTCTTCTACGAGAAGGATTCTGAAGGTGCACTATATCCGGATGGTACATCTGGACGGAATAAGAAAGATGATTCTGTGGATCCTGGTGAAAACTACACGTACAGATGGAAGGTGACAGAAGAGTTTGCCCCTACCAAATCTGATGCCAACTGCCTCACCTGGATCTACCACTCCCATGTAGATGCGCCTAGAGACATTGCAACAGGACTTATCGGGGCTCTGCTCACCTGTAATAAGGGAGTCCTAGACAAGTCTGGAATTCGACGCTCTGATGTGGATCATGAGTTCTTCCTGATGTTCAGTGTGGTAGATGAGAATTTGAGCTGGTATCTTAATGACAACATTGAAAAGTTCAGCCCTGATGCTGCTCTTTATAAAGAAGATGAAGAATTTCGGGAGTCCAACCTCATGCACTCAATCAATGGTTACGTTTATGGTAACCTCCCTCCATTAAACGTGTGTATCGGGCACGCTGTGTCTTGGCATCTATTTGGCATTGGCAATGAAGTAGATATTCATTCTGCCTACTTTCATGGCCATACCCTGCTTGACCGTGATCACCGTACTGATGTGCTCAGCCTATTTCCTGCCACATTTGTCACCGCAAAAATGGTTCCCATGACAACAGGAACGTGGATGTTAAGTTGCCAGGTTAATGATCACATGCAAGCAGGTATGCAGGGCTTCTATCACGTTTCTTTGTGTGCGAAGGATGATACTGCACCCACAGTGCCTCCTGGCCATGAGAGACATTTCTACATCGCTGCTGAGGAGCAGAAGTGGAATTACGCCCCATCGGGGATCAATAAATTCACAGATGAACCTCTAGATAAGAAAGGAAGTGATGCTGCAGAATTCTTCAGTAAAGAGGAGGGCAGGCTGGGCGGGACGTACTGGAAAGTCAGATACGTTGCATACCACGATGACACGTTTACCACCAAGCTTGAGCAACATGGCTCAGAACACCATCTTGGCTTTCTGGGCCCAGTCATTAGAGGAGAACCTGGAGATATCATTGTGGTAACCTTTCGGAATATGGCAACACAGCACTACAGCATGCAACCTCATGGTCTGTCTTATGATAAAATTTATGAAGGGGCCATGTATCAGGATGGTTCTCAGAAAGCAGGGGCCAGTGTGGCACCAGGTCAGACGTTTACATATCGATGGCGGGTGATAGAAGGCCCTTCGCCCGGTGACCCACCCTGTTTGTCGTACTTATATTACTCAGCTACAGATCCTGTCCGTGACACCAACTCTGGGTTAGTGGGACCGTTACAGGTGTGCAAGAAAGGAGTTCTGGATGAGAGTGGTCGGCAGCATATAGGGTCGGAGGTGCAGAAAGAGTTTTTCCTACTCTTCACTGTGATCGATGAGAATGAAAGCTGGTATCTAAAGAAGAACACTGATGAGTTTGGTAGTGATGAGTCAGACCCAGAAAACCCAGTATTTCAGGAGAGCAACAAAATGCACAgtGTAAACGGTTTCATGTACGGGAACCTTCCTGCACTTGATTTGTGTGAGGGGGACCATGTTGTGTGGCACATGCTGGGCTTGGGCACAGAGGTGGATCTCCACGGCGTTTATTTCCAGGGAAACACGTTTCAGCGGGACGGCACTACACACGACACACTTAGCCTATTTCCTCACACCAGTGTCACTGTCTCCATGAGACCAGACAACAACGGTGTTTTTGAGCTGAGCTGTCGTACAACTGATCACTACCGTGGTGGCATGCTCCAGCTGTACACAGTCAAACCCTGCACACCAAGCAAGAACTCTGGATCGGAGGTTACGACGTTTGAGCCCGATGTGTATTTCTACTTGGCTGCTGAAGAAGTGGAGTGGAACTACGCCCCAAACCGGACGTGGGAGTTGGAGAAACACCACACTACTCTACGTGACAGTCCTGGGAACGTCTTTCTCAATAAATCTGAGAACCGGATTGGCCCCGAATACAAAAAGGTGGTGTACCACCAGTACACAGACGACACCTTTACACACATGAAGTCCAGAGGTCCTGATGAAGAGCATCTAGGCATTCTGGgtccCATTCTCAGGGTGGAGGTTGGTGAGAGGGTCCAGGTTGTGTTTAAGAATAAGGCATCAAAGCCATATTCAATTCATGCTCATGGTGTGAAGGCCAGTGAGAAAAACACACCTGTTTCTCCAGatAACGTCATGAGGTATAACTGGACTATCCGTTCAGGTCCTGGACGCAGTGAGCCCAACTGCATAACCTTTGCCTATTACTCATCAGCTGACTTCATCAAGGACTTGGCGAGTGGCCTGGTTGGACCGTTGGTAGTGTGTCGTAAAGGGACTCTAGACAAAGCCAACCGAAAACGAACAGATGTGGATAAAGAATTCGCTCTGCTCTTCATGGTGTTCGATGAGAATGAATCCTGGTATCTGGAGGACAATATACAAACATACCTGAACAAGACCCTAGACACTTTTGACAAAGACGATGAGGGATTTATGGAGAGTAACATGATGCACGGTATTAATGGAAAGCTGTATGCTAACCTGCCTGGATTGACGATGTGGCAAGGAGATCGGACTGAGTGGTATTTAATGGGGCTGGGAAACGAGATAGATATGCACACAGTGCACTTTCACGCTCAGAGCTTCATATACAAGacGGATTACCCCCACAGAGCTGACGTGTATGACTTGTTCCCTGGAACATTTAAGACTGTGGAACTGGTAGCTGGAACTCCTGGAACGTGGCTCCTTCACTGCCATGTGACAGACCACATCCATGCGGGCATGGAGACGACCTTCACCATCGCCAGTGACGGCTGCACATATTTACAGAGTGTTCCACAAATGCTGCTATTCATCACACTGGTGTTCTGGCTCCAGTGACTCAGAAGAGGAGATGTTTCTGGAGACCAATCAGAATTTACCACACTCCAAACTGTGAGACGAGAGGGAGGCAGAAAAGTACACAACACATGAATGCACTAGACATGAACTCGTATTTAATGAACAAATTGCATTCTACATTTATGACCAGTTGGCAAAAACAAGGAGAAGGCCTTAAGTACTTTTTTCCTCTGCATGTTTACAGGTgtagtatttttcattttttttatttaaatgaatgggAACAAGCAAGAACAGTGGCATATCCAGAACGTAATTTCAAGGTTCAgcaaatatactaaataaattgTGAGCTTTATAATTAAACTGATAACTGTAAAGTGGATTTTGAAATATatctacaatgttttttttccatgtacaCTGGAATGATTAAGCTAACTAAGCAGACTGCTGTGCTCTTTATTTCCCATGCCACAAGCATAGTGGTGCACTGAACTGAATTTGCTGACTCAACTTGAGATGCTTAGggtttataaaaaaagaaaaaaaaaaaaaaaaaaaaaaccctaa

Function

GO: NA

KEGG:

id description
K14735 HEPH; hephaestin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394071 lncRNA upstream 35304 16041384 ~ 16041587 (+) True G332788
TU393930 lncRNA upstream 459657 15592088 ~ 15617234 (+) True G332650
XR_004576951.1 lncRNA upstream 497093 15570863 ~ 15579798 (+) True LOC113541248
XR_003404160.2 lncRNA upstream 505074 15570863 ~ 15571817 (+) False LOC113541248
XR_003404151.2 lncRNA upstream 657968 15413872 ~ 15418923 (+) True LOC113541145
TU394073 lncRNA downstream 4979 16101750 ~ 16102212 (+) True G332790
TU394074 lncRNA downstream 5500 16102271 ~ 16102597 (+) True G332791
TU394160 lncRNA downstream 122782 16219553 ~ 16220945 (+) True G332859
TU394510 lncRNA downstream 499010 16595781 ~ 16620089 (+) True G333157
TU394501 lncRNA downstream 508377 16605148 ~ 16633783 (+) True G333148
XM_026937826.2 mRNA upstream 446926 15620148 ~ 15629965 (+) True panx1a
XM_034297849.1 mRNA upstream 462000 15587302 ~ 15614891 (+) False tpk1
XM_026937807.2 mRNA upstream 462000 15587671 ~ 15614891 (+) False tpk1
XM_026937805.2 mRNA upstream 462000 15587805 ~ 15614891 (+) True tpk1
XM_026937806.2 mRNA upstream 462000 15587822 ~ 15614891 (+) False tpk1
XM_026938234.2 mRNA downstream 103725 16200496 ~ 16219013 (+) False LOC113541322
XM_026938235.2 mRNA downstream 105213 16201984 ~ 16219013 (+) False LOC113541322
XM_026938231.2 mRNA downstream 105214 16201985 ~ 16219013 (+) False LOC113541322
XM_026938230.2 mRNA downstream 105214 16201985 ~ 16219013 (+) True LOC113541322
XM_026938232.2 mRNA downstream 105214 16201985 ~ 16219013 (+) False LOC113541322
TU393912 other upstream 510228 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 812304 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 2691617 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 2818475 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 3364213 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 1010701 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 1010701 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 1188311 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 1190389 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 1190389 17287160 ~ 17295054 (+) False G333388

Expression Profile