RNA id: XR_004576994.1


Basic Information

Item Value
RNA id XR_004576994.1
length 1837
RNA type misc_RNA
GC content 0.47
exon number 14
gene id vipr1b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17185524 ~ 17239116 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGCGCGCTGAAGTTCCTTTGCTGGCTGCGCGCGCGCGAGCGGAATAACTGACGCCCAACGGTtttctgaggtgttttattattattattattatttatttatttttgagagaGAAAAGTCGACGAGAAAACTTTTTTGGTTGTTATTTTCTCgacgtgtttaaaaaaaacaaacaaactaatagTGAAAAACAACTCCTCGCCGGTCATGGATGCTTTAAGATTTGTGATGTTTGTTTCAAGTCTGAGCTTCTTTCTCTCTACCAGCAGTGCAGTCCAGATGTGTGACATGGTAAATGAAATCGAGTTGGAGAGGGAGCGATGTGAAAACAGAACTGCTGGGAATATAACATCAGGCTGCAAAGGAATGTGGGACATCATCATCTGCTGGCCGTCAGCCAAAGTCGGAGAGCTGGTGGTAATTCCATGTCCGAAATACTTCAGGTACCTCAACGAGCACTACAGTGGAGGTAATCTCTCCAAGACTTGCACAGCAGATGGCTGGACTAAAGTGCTCCCCATAACGATTGCTGTGAATTGTGGATATAATCCCAATGGCACTGTCGATGAGatCTCTTTTAAGGATAATTTCTACCGGTCGGTTAAGATTGGCTACACCATCGGACACAGCgtttctctcatctctctgaCTACAGCTATAATCGTACTGTGCATCTTCAGGAAACTACATTGCACAAGGAATTACATTCACATGCACTTGTTCGTGGCTTTCATCTTGAAAGCCATTGCAGTGTTCATTAAAGACGTCGTCCTCTACGATGTCATTCAGGAGTCAGACAACTGCTCCCCTGTCTCTgtTGGCTGCAAAGCTGCCATCGTCTTCTTTCAATATTGCATTATGGCGAGTTTCTTCTGGCTCCTGGTCGAGGGCCTGTACCTTCACACCCTACTGGCTGTCTCTTTCTTCTCAGAGAGGAAATACTTCTGGTGGTACATCCTGATTGGCTGGGGAGGGCCGATGATTTTCATCACAGCCTGGAGCTTTGCCAAAGCCTACTTCGATGACGTTGGGTGCTGGGATATTATCGAGAACTCAGACCCGTTCTGGTGGATCATCAAAACGCCTATATTAGCTTCTATACTGATGAACTTCATCCTGTTCATTTGTATCATACGCATACTGCGGCAGAAGATCAACTGCCCCGACATCGGGAGAAATGAATCAAATCAATATTCGAGGCTGGCTAAATCGATGCTGTTGCTGATTCCACTCTTTGGAATAAACTTCATCATATTTGCATTCATCCCAGAACACATCAGAACAGAGCTGAGGCTGGTGTTCGACCTCATCCTGGGTTCCTTCCAGGGCTTTGTGGTGGCTGTCCTCTACTGCTTCTTGAATGGAGAGGTTCAGGCTGAGATCAAGAGGAAGTGGAGAAGGTGGCATCTAGAGAGGTTCCTGGGCTCCGGCACTAAGTACCAGCACCCGTCTATGGGCAGCAACGGCAACAACTTTGCCACTCAGATCTCCATGCTGACGCGGTGCAGCCCTAAAACTCAGCGAGCCTCCACCTGCCACGACGACTCCTCCACCACCATATAGCTCAGCAGAGTCACCTGACACAGGACAGTAATCGTCTGTAGATCCACTCATACTGTGTGTCGTACGCATCAGGATATGGGTGCAGGATTCTGTGAAGTTCCTCTCAATTCAGATGGCATGAGGGTACCACAAGCACTCCGCATCACATTCTCTTGAGATATGAGCTACGTATGGCTCAGAGGTGCTGGTCTACCTGTGGAATCCTTGCCTTGCTATTACAGAAGACACCTTTAACAGTGGATACTGCTGATGGAAGTTGAGCAGAAGCAGCT

Function

GO:

id name namespace
GO:0007188 adenylate cyclase-modulating G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004999 vasoactive intestinal polypeptide receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394919 lncRNA downstream 99320 17085883 ~ 17086204 (-) True G333470
TU394903 lncRNA downstream 148012 17037167 ~ 17037512 (-) True G333454
TU394901 lncRNA downstream 154827 17030465 ~ 17030697 (-) True G333452
TU394860 lncRNA downstream 176791 17007827 ~ 17008733 (-) True G333417
TU394880 lncRNA downstream 230061 16953725 ~ 16955463 (-) True G333434
TU394977 lncRNA upstream 46647 17285753 ~ 17299701 (-) True G333525
TU394987 lncRNA upstream 46647 17285753 ~ 17291010 (-) False G333525
TU394988 lncRNA upstream 48150 17287256 ~ 17295034 (-) False G333525
TU394991 lncRNA upstream 48150 17287256 ~ 17301996 (-) False G333525
TU394986 lncRNA upstream 51031 17290137 ~ 17301996 (-) False G333525
XM_026938200.2 mRNA downstream 24317 17142461 ~ 17161207 (-) True nktr
XM_026937796.2 mRNA downstream 45839 17116098 ~ 17139685 (-) True zbtb47b
XM_034298271.1 mRNA downstream 46582 17116098 ~ 17138942 (-) False zbtb47b
XM_026938154.2 mRNA downstream 111882 17030860 ~ 17073642 (-) False ctdspla
XM_026938152.2 mRNA downstream 111882 17030860 ~ 17073642 (-) True ctdspla
XM_026938256.2 mRNA upstream 27150 17266256 ~ 17276128 (-) True si:ch211-161h7.4
XM_026938267.2 mRNA upstream 38298 17277404 ~ 17281623 (-) True si:ch211-161h7.5
XM_034297896.1 mRNA upstream 66049 17305155 ~ 17309921 (-) True ccdc58
XM_026938088.2 mRNA upstream 77414 17316520 ~ 17329657 (-) True kpna1
XM_034298202.1 mRNA upstream 125535 17364641 ~ 17378007 (-) False qtrt2
XR_003404146.2 other downstream 45839 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 305640 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 305641 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2119714 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 2248120 14936886 ~ 14937404 (-) False LOC113541102
TU395488 other upstream 668788 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 670832 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 685969 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 1139930 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 1140543 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile