RNA id: XM_026938246.2


Basic Information

Item Value
RNA id XM_026938246.2
length 725
RNA type mRNA
GC content 0.43
exon number 5
gene id si:ch211-161h7.8
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17329834 ~ 17333509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATGCTTGTCAGATTTTGTTTGCTTTAATCAAATGTCTAGTTTgcaatcatttgcatatcacatAAACCCTAATGGGTTGCGGTTCAGAGTGCCAGAAGCCAGAAGCATGGAAAGCTGCAGCTCAGAGAGCCAATAACAAACCTGTTCACTGTGTGGGGCTCAGAGCTGGACTGAGGACATCATGCATTCATCACACCAGAAAGGAGAAATCTGATCTAgACTCAGTTGTGACATATGAACAGCTTAAGATGatgctggccaatcacagtgtcCAGTTATTTGACATCCGAAATCGGGATGAGTTCCTGGCAGGCCATATTCCTGATTCTGTCAATATTCCACTGGGACAGCTTGAGGAATCATTGATGCTTTCTCCAGAGCAATTTGAAAAGCTTTTCAAGGTGAAGGCCCCCAAAAAGGAGGATGACAATATCGTCTTTCATTGCCAAAGAGGCCGTAGGAGTTTAACAGCTCTTGAAACTGCCTGGCGTCTGGGATTCAGCAGGGCACGTCACTATGCAGGAGGATACAGTGAATGGgttgaaaaagagaaacagtagCTAATCGGTGTGTAAAGCACGTTCAGAAAAGTTTGCCATGCCACCATCACTTTAACCTTTTCGATTTTGCTTGAAAAAGACTTTTAAGTAAATAGCTGCCATTTAATCTACTTTTGATTGCAGTCTTTACCATTCTGTTCACTCCATGTAGGATTTAGCTTTA

Function

GO: NA

KEGG:

id description
K01013 TSTD1; thiosulfate:glutathione sulfurtransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394762 lncRNA upstream 143159 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 431979 16893006 ~ 16897855 (+) True G333244
XR_003404172.2 lncRNA upstream 439673 16888937 ~ 16890161 (+) True LOC113541357
TU394631 lncRNA upstream 440105 16888906 ~ 16889729 (+) False LOC113541357
TU394612 lncRNA upstream 499855 16772003 ~ 16829979 (+) True G333232
TU395018 lncRNA downstream 29362 17362871 ~ 17363075 (+) True G333548
TU395063 lncRNA downstream 112676 17446185 ~ 17447043 (+) True G333582
TU395113 lncRNA downstream 207128 17540637 ~ 17541761 (+) False rnf6
TU395303 lncRNA downstream 334127 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 336907 17670416 ~ 17670625 (+) True G333791
XM_026937860.2 mRNA upstream 14134 17310721 ~ 17315700 (+) True fam162a
XM_026938186.2 mRNA upstream 30444 17296573 ~ 17299390 (+) True LOC113541297
XM_034298096.1 mRNA upstream 38939 17287140 ~ 17290895 (+) True LOC117595788
XM_026938185.2 mRNA upstream 43098 17285104 ~ 17286736 (+) True LOC113541296
XM_034298269.1 mRNA upstream 158236 17163000 ~ 17171598 (+) True sec22c
XM_034298150.1 mRNA downstream 2683 17336192 ~ 17353309 (+) True drd3
XM_026938106.2 mRNA downstream 2683 17336192 ~ 17353309 (+) False drd3
XM_026938210.2 mRNA downstream 44792 17378301 ~ 17390639 (+) True ccdc191
XM_034298218.1 mRNA downstream 44792 17378301 ~ 17390639 (+) False ccdc191
XM_026938140.2 mRNA downstream 98537 17432046 ~ 17434825 (+) True urad
TU394792 other upstream 27830 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 28137 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 29823 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 29823 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 34780 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 653253 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 981847 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 981849 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 981851 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 982174 18315683 ~ 18323295 (+) True mtfr1

Expression Profile