RNA id: XM_034298202.1


Basic Information

Item Value
RNA id XM_034298202.1
length 1938
RNA type mRNA
GC content 0.49
exon number 9
gene id qtrt2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17364641 ~ 17378007 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGACGACGGAGCGGGTTGATGGTGACGTAATAAATGTGCGACTCTACATCTGGGTTCGCTCATAAATCTGCGACTTGTAGTATTTGTGTTCACGTGCCTTACACAATTCTGTTAACCACGCTCGACTGCGCCGGTGCCATGAAGCTGGAGTTGTCTAAGGTGGTGCGAGGTTGTCGTCTGGGGCTTTTGACCAGCATCGGGCAAACCGAGCAGCACTCACTGGAGGTTCCAGGCTGTTTCCTGTACACCCGCTGTGCCACCGTGCCCCATTTGACCCAggacacacttcacacactcagcaaCCTGCCTGCAGTTACACAGGTCACACTGGAGAGCCTCGCAGAGCACCAGGACGTCCTGGAGGAGTTTAAACATGGTGTGAGAAAGTTTGCAGGTCTACAGGACACGCTGCTCTTCTGCTCCCTCCATGACCCTGCCACGACCCATCCCGCTGGCCACGTCACCAACAAGACGGTGTCCGTGTGGGGCAGTGGAGGAAGAATAGAGCTGTCAGTGGCCAAGTTTATGGCCATGCAGGCAGCCATCCGGCCAGACTGCTATGAGAGCATGGCAGATGGAGAGACGTGGCAGGCGAACACATCGCGGAAGAGGGTGCGTAAAGCAGTGGAGCGCACTCTCTCACATCTGGACGAGTGTCTCGAACTGCACCATAAAACACAGGAACTGAAAGGGTGTGAGATATTCGGTGTGGTGGAGGGAGGTGACATCTTGGAGGAGAGGCTGAGGTCAGCACGCGAGACGGCCAAACGGCCCGTGGCTGGATTCGTCCTGGATGGCTTCCAGTCCACCTCCATGGAGCAGGAGCTCAGGGAGCAGCTGATCACAGCAGTGACTGCAGAGCTGCCTCAGGAAAAACCGAGGTTGTTGAGAGGCGTGGGTCGTCCAGATGAGGTCATAGCATGTGTGGAAGCTGGAGTGGATCTGTTTGAGGGCTTCTTCCCTTTTCAGGTGACGGAGAGAGGCTGTGCCCTCTGCTTCAACTACACCATCACACCTGACCCAGAGACTGCAGtttTGGAATCAAATGGAGAGGAGCCTGCTGTTGAAAAGCTGAAGGAAAATGGAGATGGCAGCCCTGAAAATATGACCCGATTTGAGATGAACCTGAAGGACACAAGGTACCGGGATGATTTCCGGCCACTGGTGGACAGGTGTAGCTGTTACTGCTGTAAGAACCATAAAAGGGCTTACATCCATCATCTGCTGGTGACCAATGAGCTGTTGGCGGGGGTTTTACTGATGTTGCACAACACGGCTCACTATCTGGGATTCTTCCATGCCCTGAGGGAAGCCGTGGCCAACAACCGGCTCCGAGACTTGAAGAACAAAGTGTTACAGTGACCAATGTGGACTAGAGAACGTGGAATAAATGCAATCACTGAGGGTTCAGGGGAACAAGGAGTGTTGTGTTGAAATGCACTACATCAGTAGTACTAATCTGAAAGACAGCAATCCAATTGAAAGCAGGAAGTCCACCATCTGTAAgaaattttaaacatcattcCTGTTAATGTAGTATCATTTTTACACAAGCGTGATACGAAGAAATTTATTCATCAATGATTCAtcatattcttcttttgtcaaaggcagtTTTTAAAGGCTATGTGGAGGAAAAActtgttaatttcccctatgtatggagacttttgggacaccctgtagttgcATATTATGTATATTCATTACTCCTGGTATTCTAAATAAGGGTAAAGGTTTAGAGATGTTTATAAAGAATTTTAGTGATTTATTGGGCATAAACCTTTAACAGTTTATTATTCTACAAAGATGCACAGAATTTTAGTGCTGTTTTTCATGGCAGCTATTTTTTCAGCTCACTGTGCTCAGCATTTCATCGGTCGTTCTTCTAAATGCActtatttttaactgttaaataaacaatggGTTCTAGGAGA

Function

GO:

id name namespace
GO:0008616 queuosine biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008479 queuine tRNA-ribosyltransferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394991 lncRNA downstream 62645 17287256 ~ 17301996 (-) False G333525
TU394986 lncRNA downstream 62645 17290137 ~ 17301996 (-) False G333525
TU394977 lncRNA downstream 64940 17285753 ~ 17299701 (-) True G333525
TU395143 lncRNA upstream 289 17378296 ~ 17378572 (-) True G333649
TU395144 lncRNA upstream 2848 17380855 ~ 17381236 (-) True G333650
TU395146 lncRNA upstream 5735 17383742 ~ 17384023 (-) True G333652
TU395147 lncRNA upstream 7272 17385279 ~ 17385646 (-) True G333653
TU395150 lncRNA upstream 11447 17389454 ~ 17389741 (-) True G333656
XM_026938088.2 mRNA downstream 34984 17316520 ~ 17329657 (-) True kpna1
XM_034297896.1 mRNA downstream 54720 17305155 ~ 17309921 (-) True ccdc58
XM_026938267.2 mRNA downstream 83018 17277404 ~ 17281623 (-) True si:ch211-161h7.5
XM_026938256.2 mRNA downstream 88513 17266256 ~ 17276128 (-) True si:ch211-161h7.4
XM_034298305.1 mRNA downstream 125525 17191319 ~ 17239116 (-) False vipr1b
XM_026938211.2 mRNA upstream 12648 17390655 ~ 17397944 (-) False zdhhc23b
XM_034298220.1 mRNA upstream 12648 17390655 ~ 17397925 (-) False zdhhc23b
XM_034298219.1 mRNA upstream 12648 17390655 ~ 17397925 (-) False zdhhc23b
XM_026938214.2 mRNA upstream 12648 17390655 ~ 17397925 (-) False zdhhc23b
XM_026938213.2 mRNA upstream 12648 17390655 ~ 17397925 (-) True zdhhc23b
XR_004576994.1 other downstream 125535 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 224956 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 484757 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 484758 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2298831 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 529887 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 531931 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 547068 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 1001029 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 1001642 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile