RNA id: XM_026938256.2


Basic Information

Item Value
RNA id XM_026938256.2
length 4489
RNA type mRNA
GC content 0.46
exon number 18
gene id si:ch211-161h7.4
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17266256 ~ 17276128 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTGCTCATCTGCGCCAAACCGAAAGCGCggcgaagaagaagaaagaagtggGCGCGGGAATTTGTGTTGACAATTGTTTAGCGAGTTAGCGAGTTAGCTTCTTTACCGTGCGTTTGCGATTTCTTGTGTCTGGAAAATACAGCAATATTATAAAAGTCTCATTTCTAAATAAGGGAAATGTTAACTTTTATGCTGGGGCTGAGAATTTTCCAAATTGAGCCAGCTAGtcagctaatgctagctagctaaaaacaATATTGAAACCAATGAGTATCCATCGCTAAGCTAGGCTAGGCTaggctaagctaagctaagctagcgAATTTGTTCTGAATAGTTCAGCCTACAGAATAAACTCCACCGGCGCTGAAGCTTTTCTCTGACAATGGACCGAAAGATGATGAATTTGGGGAGAGCGAAAAAGAAACTTCGGTACTTTCAGTCAGAGGAAAACACTCCATGTCAGCTGAAGATTAAAGATGTCTTTAGTATGCGAGACCTTGACAATATTTTTGACGATTTAGATTCTGATCCGGGGACGCCGCTGCTCTCACCGCTGCCCAAGAGCCCGGGGTTAGACGAGCAAAATAAAGGGACCCAGTCGCCGGTTCTGAAGTCGCCCTTACCTTTCCGAGGGGAGATCAGTCCTCTCAAGGGTTCAGATGTTTTGGCAGCAGAAGCTGAGATTCAGACGGACCATTTAAACGGAAAAGGAAGCCCGTTTGAAGAAATTGCTCCTATTAAGACGTCCAGTCCGATTGAGCTGTTAGCAGTTGAAGGTGTTGTAGAGGATGCAGAAAAGCCCGAAACCTCTCCGCTGCTCTTCGGCATTGAGGATGAGGAGCCAGTTGTGGGCGACTTGAGCAAACCACAAATGAGTCAGAAATCAGAATCCTCAAAGGACGTTCCTCAGGGGGACAGCGAATCGTTGGCGTCTCCTCCAGCACGATTGGAGTTCGGAAAGCCGATAAAACAGAATGATCCTGTAACAAGctCAACACCGCTAAAAGCACCAGAAGCACCAGACCAGGTGTGCAAGACCTCGGCACCGGAACCCGAGGAAGAGTCGCAAACaGATGGGCGCCTAAGTTTATCCCCCATAGTTTTGATTCAAAAGCGTCAGCCTGAACCTCTTCCAGAGGAGCAACCTAACAAGCAGGTGCAGGAAGTGGCCGTGGAAGTCGGAGTTAAACAATCGTTGTTTCAGAAAAAGCTCAGACATTCCTTACAGCCTAAAGCCTCAGGtttcaggaaacaggaaactCTGAAACAACCAGCTCGCGCTCCCTCACCACGTATTCAGGAGGAAGACTTCATGATCCTGGAAGATGACGGTCCCATTCGCTTCACAATTCCCAGGAAGACtgagaataaagaaaaacctgCACCAGAGAGCAGGTCTGTGGAGCCGGATTTGAAAGAGAAAGCTTCTGCAAAGCAGACAGAAGAAACCGAGAGCCACAAAGATGAacccaaaaagaaaacaaaggcaAAGCGTGGAAAGGCCAGTGATATGGCCAGTAAAGACACGGTGGTTCAGTCAGCTCCAGAAGAGAGAGACGATGAAGTCAACGAAGACGTGGGAGGTGGAGAACAGATCTGTCTTTCTCCAGACACCAATCAAGATGCTGATATACCTGttacaggTAAACAGAGACCAAAAGGCAAAACCTCTAAGCCTGACCAGCAGGGCAGCAAAGATGGAAACGATGGTGGTGCCAAAATTCCAGCTGAAAAGCCTGCAGCTGAAAAGCCCACAGCCAAAACAAAGAAATCTGCAAAATTGCCCACCAATATTAATACAGAACAAGAAGAGCCTGTGTCAAGTGTGAAGAAGAAACCcactaaaataaaatctgcCATAAAGGCAGGCACACCTGAGTCTACAGGTTTAAGCTCTGCAAAACCAAAGAAACAAGATGAAGACAGGAGTGCGTTAAAGAATAAGAAACGGGCTAAAGAGCAGGAGCACGTGGCCGAGGTGCGAAATCACACTGAACCACCACCGGATCCTGCTGGGCAACCAGAGGTTCAGAGCATGAATACAGttaataaagcaaataaaggGCCTGCATCTAAGCAGCGTGCGCCAAAGAAGCCAAGAAAGGTAAAGAAGACAGAGGAAACTAAAGAAATCTTAGAGATAAAGGAGCTTCCTGTGCCTGAGCCTGATGTTTCTGCAGAGGCTTCTGCAACCagcaagaggaagagaaaacCACCTGGGGAGTGGTGGCTCGCACAACACGATGAAAACAACACGCAGGAGCAGCAAGAGGCAGTTCTCACTTCACAAGAGCTCAAATCCAACAGGAAAACCCAAAGGAAAGCTCCAGTATTAACAGACTCAACCGAGCAAGAGTCACCTACGACTTCTCAGGAAATCCAGAATGAGTCTGTTACTGTTCAAAAACTGCCCAAAAAGGTGAAGAAGTCCCAGGCTGATAAATCTCAGTCTAATCCTGCTGGTTCCCGGAAAAATCTTAAATCAGCTGGTGGCAGAAGGAAAGCAAAGGCAGGAGCTCAAGACCAGCGTGAAATGACGCCAGCTCAGATGGGTGAAGAAGAGGCGAGAGACAATGAGGCTTCAGGACAGCTCAGTCCAGTGGCATGTAGACAGCGCAGTGTAACTCCAGGAGATAAGAGGGTGTTTGATAAGATCTACACACGGGAAGGTCAGAGTGGATCAGCTCAGAAATGTCCTCCTCCAGTGTTACTTGATGCGCTGGAGAGTGTTCCAGTAAAACGCCACAGAAAACCAACCAGCAGCTGGTGGGAGGTTCCACAGTCTCAGGGACTTGTCGAGAGCTCTCAGTCTCCACAAAattcttctccacaaacatcCAGACCGCAGATGGGCCCTCCACGGCGTGCGTTTCATAAAATGGCCAGTTTACAAAAGACAGTGGGTCGtggccagaaaaaaaataaaattaacatgatTAACACTCCAAAGTCAATCAGAAGATCGTTGGCCACATTTGATGCCATATATGACTCCGGGAAACCGGGCCCCTCTACAGAGAGAGGGCAAGGAGCCTGGCAGAAGGGCCGCAGAAACTTGCTGCACTCTCTGGAGGATCAGTCGGAGCAGTCCAGTGAGAACATCCACAGCGACTGTCAGCAGCAGGCTAGCAGCCACGCTACGTttgacgtgtgtgtgagtggtgttgTTCCAGAGTCCAGTGCTGCTCGGAGGAAAGCTAATCCTCGAGCAACAAGTGGATCCAACAGAGCATCTGATTATGACATTGCTTTCAAAAGTGGTCCTTCATCACTAATTGAGCTGGAGAGATATGAAGAGCATGAGGACGTTGATTTGCCGTCATCTAGGATCATTCCTCAACCACGATTCACACCCCGTGTTCTGTCCGATTGTGATCTGTGTGGCCCTCCACTAAAGCCCATTGTTCTCGATAACGAAGACTGGGATAACCTCTGTGTTTGGTTCACTCATATCTGGCCAACCACGTCAAAAGATGGTAAAGGCATTAGCCCAGATGACTTCCActggcactgtcatgctggacgAGCCATGGGTCACATGGTCGACCTTCAGAACAACACATTCTCAAGTGGCAAGATTTTATTGGGCTCGTATATGAAGAAACCTGCGCAGTTGGATCTTAATGCCATTACtgTATTTAACGTAGCATCAAGTTGTGTGCGGGTGGAAATCGACGGCGTCAAGGAGGTCTACAACTCGGGGCAAACATTTATGGCGCCTTGTGGGCAATCGTACAGCATTCACAACATGTGCCAGGAGCCTGCTGTTTTGTGGTACCACAGGATGATACCAAATCACACAACGAACTGACATGGAAGAAGCATCACTGCAAGAAATCATGTCCTTTGGTACAAGTGTTTATGGATATGATAAGACCAAGATATTGATGTTGTAACATGAtgtaaatatattgtttttaaagtCATATGGATTTGAAAGAGCCTAAAAGGCTTAGTATTTGCCTTCAGAGGGAcagttttgctgttttaatgtaaataacattGTTGCACCGGTTACAGATTGAAAAGACAATATGACTCTCAttgttaaatttgttatttaaagcaTTGCTTCCTGTTTTTACTATGAGGCATAAATCTAGATGCAATTTTCcttcaaaatgtcaaataaaataaCTTGTCAGTAGGGGGCATTGTATCATAATGCATATGTCACCCTCAGTCCttgggtttaaaaaaagattccaGTGAAGATTCCAATGAAATTCAGGATATTTGGAGATTGTGGCTGTACGTATGTTGGATGAATCCTGATTACCTGTCAGCATCAATATGTGAAGTGGCCTCACAGCCTCTTGTTGGGCATTTAGCACATGAACATTATTAGTATTCATCTCTAACAATGCACCAGTGATGAATCTGCATTGAAAATGTGTTCTCTTAGAGATGATTGGAGTTCCACAGTCTGCTCCGTGTGCTTGAGAGCTGTCCATCTATTCCGCATGCTGAACCCTCTgtccttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394919 lncRNA downstream 180052 17085883 ~ 17086204 (-) True G333470
TU394903 lncRNA downstream 228744 17037167 ~ 17037512 (-) True G333454
TU394901 lncRNA downstream 235559 17030465 ~ 17030697 (-) True G333452
TU394860 lncRNA downstream 257523 17007827 ~ 17008733 (-) True G333417
TU394880 lncRNA downstream 310793 16953725 ~ 16955463 (-) True G333434
TU394977 lncRNA upstream 9625 17285753 ~ 17299701 (-) True G333525
TU394987 lncRNA upstream 9625 17285753 ~ 17291010 (-) False G333525
TU394988 lncRNA upstream 11128 17287256 ~ 17295034 (-) False G333525
TU394991 lncRNA upstream 11128 17287256 ~ 17301996 (-) False G333525
TU394986 lncRNA upstream 14009 17290137 ~ 17301996 (-) False G333525
XM_034298305.1 mRNA downstream 27140 17191319 ~ 17239116 (-) False vipr1b
XM_026938244.2 mRNA downstream 27150 17191319 ~ 17239106 (-) True vipr1b
XM_026938200.2 mRNA downstream 105049 17142461 ~ 17161207 (-) True nktr
XM_026937796.2 mRNA downstream 126571 17116098 ~ 17139685 (-) True zbtb47b
XM_034298271.1 mRNA downstream 127314 17116098 ~ 17138942 (-) False zbtb47b
XM_026938267.2 mRNA upstream 1276 17277404 ~ 17281623 (-) True si:ch211-161h7.5
XM_034297896.1 mRNA upstream 29027 17305155 ~ 17309921 (-) True ccdc58
XM_026938088.2 mRNA upstream 40392 17316520 ~ 17329657 (-) True kpna1
XM_034298202.1 mRNA upstream 88513 17364641 ~ 17378007 (-) False qtrt2
XM_026938253.2 mRNA upstream 88513 17364641 ~ 17378007 (-) False qtrt2
XR_004576994.1 other downstream 27150 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 126571 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 386372 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 386373 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2200446 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 631766 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 633810 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 648947 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 1102908 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 1103521 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile