RNA id: XM_026938259.2


Basic Information

Item Value
RNA id XM_026938259.2
length 778
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC113541340
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 12162455 ~ 12179621 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcgcttctgattggctgatggagCCGATCACGGAAAGCACCTGCTCCATTCTAACAGGCGCGTCTGAGTCGAGACCCATGCGCTACTGCACACACAGCACGTAGACAAGTTCAGCAAGCGCGCATCTTCTCAAATAAAGATGCTCTCTTCCCGTGTGCTGCTTCGGGGTTTGCGGGCTGAGACCGGGTTCTGGAGGAGCCTGTCCACCTCGACCAGAGCACTGGCTTCACACAGCCGCAGTGTTGATGTGATTGACTGCACTGTTCCCCAGTACAATAACCGTCTGGATACACCACTGCCTGACATTCCATTCGTCAGAACTCTCACTCCTGAGCAGAAGAAgctgaaggagaaagagaaggagtcATGGACGACACTCACCAAGGAGGAGAAACTAGCACTGTATAGACTCTCATTTGATCTGAGCTATGCAGAGATGAGGAAGGGCTCTGATGAGTGGAAGACGGTGCTGGGAGGAGTCTTCTTTTTCCTCGGCTTCACTGGCCTGGTGGTGTTGTGGCAGCGTATTTATGtGTACGGTGACGTgccacacactctttctcctGAATGGGTGGAGAAGCAAACCCAACGGATGATCGACATGAGGGTTAACCCTGTGCACGGCTTCGCTGTCAACTGGGACTATGAGAAGAAGCAGTGGAAGTAGAATCCCACTGGCTAACAGTGTATCCCGAGCCGACATTACCCCGAGGTTCAAATCTTAAcagctttaaaatatattcacacCATATatcaaataaacactgaatgaaaacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392027 lncRNA upstream 19590 12141943 ~ 12142865 (+) True G330976
TU392006 lncRNA upstream 128396 12024576 ~ 12034059 (+) True G330962
TU391950 lncRNA upstream 216217 11944030 ~ 11946238 (+) True G330911
TU391946 lncRNA upstream 266564 11895666 ~ 11895891 (+) True G330908
TU391895 lncRNA upstream 288263 11873992 ~ 11874192 (+) True G330869
TU392061 lncRNA downstream 31629 12211250 ~ 12273290 (+) True G331003
TU392238 lncRNA downstream 269141 12448762 ~ 12450347 (+) True G331161
TU392342 lncRNA downstream 530898 12710519 ~ 12712678 (+) False G331263
TU392357 lncRNA downstream 553188 12732809 ~ 12733703 (+) True G331277
TU392360 lncRNA downstream 561496 12741117 ~ 12741678 (+) True G331280
XM_026937798.2 mRNA upstream 5671 12062334 ~ 12156784 (+) False prkag2a
XM_026937799.2 mRNA upstream 5671 12071175 ~ 12156784 (+) False prkag2a
XM_026937800.2 mRNA upstream 5671 12095794 ~ 12156784 (+) False prkag2a
XM_034297816.1 mRNA upstream 5671 12123458 ~ 12156784 (+) False prkag2a
XM_026937978.2 mRNA upstream 218947 11900755 ~ 11943508 (+) True vps41
XM_026938147.2 mRNA downstream 2164 12181785 ~ 12234183 (+) True bcl2a
XM_026938086.2 mRNA downstream 248836 12428457 ~ 12499046 (+) True hs6st1b
XM_026938277.2 mRNA downstream 527318 12706939 ~ 12708003 (+) True LOC113541349
XM_034298168.1 mRNA downstream 531005 12710626 ~ 12712651 (+) True ccl34b.4
XM_026938097.2 mRNA downstream 586939 12766560 ~ 13015109 (+) True LOC113541231
XR_003404147.2 other upstream 5668 12062332 ~ 12156787 (+) True prkag2a
TU391847 other upstream 413896 11738158 ~ 11748559 (+) True ankha
XR_003404155.2 other upstream 1178246 10874209 ~ 10984209 (+) False acad11
TU392341 other downstream 527318 12706939 ~ 12712678 (+) True G331263
TU392569 other downstream 1078273 13257894 ~ 13258416 (+) True G331476
trnat-agu_17 other downstream 1205580 13385201 ~ 13385274 (+) True trnat-agu_17
XR_004576981.1 other downstream 3072014 15251635 ~ 15264587 (+) False si:ch73-173p19.2
TU393912 other downstream 3386554 15566175 ~ 15566663 (+) True G332636

Expression Profile