RNA id: TCONS_00008072


Basic Information

Item Value
RNA id TCONS_00008072
length 1854
RNA type mRNA
GC content 0.46
exon number 10
gene id XLOC_004215
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31869020 ~ 31872628 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCACCGAGAGAACACCCTTGTGCTATTTTAGGATGTAAGGCTCAGCACAAGAGCCTTCACCGTCTTCCTGCAAATGAGCAACAGAGGCTTAAGTGGCTGAGTTTTATCTTTGAAGACAAGGTGCCTGAAAATGTACCAAAACTGTTGTATGTTTGCGCTAACCACTTTAGCGTAGACTGCCTCGAGAACGCGGGACAATACAACTCCGGATTCGCgagtaaattgtttttgaaaactggaTCAGTTCCTACAATACGTGATCCTGTCTCACTTCAAGCCACGACGTCGACAAAGAGCAACAAGGTGGATGTAGCTTGCCAGACAGAACCTTTTCACACATCTTTACACAGTGTTGGCACCCAGTTGTCTTTTAGGACGCTTCAGGCTAAACGCAGGAGTACAAGTGTCCAGACAACAATATCCAGTTTTGAACTGACTGTGCCATCAGCGTCCTCTACTGCGTTTATGACTTCGACACCCCTCAAACCTTCACTAAAAAGACCTCGTCTggagctggaggaggaggaggaagaagaagaagccgAAGAGACTTTGACAGAGTCAAAAATTATAGCCCAAGACTCGGATGTGACATTTGACCCTGCAGAGGAATGCACATCTGCAACTGAACCAACAGACTTGTCaatccAAGAATGCCCAGTTCATAACATTGCCAAGTTCATTGTCTATGAAACATGCCTCATGGAGCTCTTCAGTGACTGCCCAGTGTGTCAGAGGAGATGTGATGTAAAGTCACAAAGGCTTGGGACATTTCTGAGCGTACAGCAAGTCTGCCCACACTGCGAGTTTGTAAGAAAATGGAACAGTCAGCCAATTATTGGTAGTACTCCAGCTGGCAACCTGCATCTTTCTGCTGCAGTCTACTTGAGCGGTGCATCATTTTTTGTAGTTGAAAAGGTATTTGCTGCAATGaaactacacatttttaaatataattcatttcgCCGTCATGCAAGACTTTGCATTGAACCTgctattgtccacaagtggagaAATTGGCAGAGTGAAATGCTAGAACAGCTCAGTCGAAGAGAGAATGTGATTGTTGGAGGAGATATGAGGGCTGACTCCCCAGGTCACTCGGCCAAGTATGGGAGTTATACAATGATGGACCTTGCAACTAACACAGTGGTCGACCTACAGTTAGTCCAGagTAATGAGGTGGGTGGCAGTTACCATATGGAAAAAGAAGGCCTAAAGAGAAGCCTTGACCTGTTGGATGCCCGCGGTGTTCGTCTGGAATGCATCATCACAGACCGACAtcctcaaatacagaaatacctCAGGGATCGAAATGTCACTCAGTTTTACGATGTGTGGCATATCGAGAAAGGAATTTCCAAAAAACTGGACAAGATATGCCAGATAAAGGGTTGTGAGAAGTTGCGTAAATGGTTACGTAGCATCAAAAACCACATCTACTGGACTGCTGCATCATCCACAACAGGTCCTGAAAGAGTGGCAAAGTGGACCTCTATCTTAAACCATGTACAAGACAAACATGTACATGAAGACCCCAATTTTCCGGCTTGTCTGCATCCGCAACGGATAAGCAGAGACAAGAACAAATGGCTGTCGGCTGCAACGATGCCATTCTATAAGCTGGAGAAAGTTCTCGCTAACAAGAGAATATTGAAGGATGTGGCCAAGCTAAGTCCTCACCACCAGACGTCAACTGTTGAAGCTTTCCACAGCGTCATACTGCGGTTTGCACCCAAAAATGTGGTATTCCCTTTTCTGGGGATGCTATGCAGgtTGTACTTGGCTGCACTGCATTACAATGAAAATGCCGGGCGTCCCCAGGCCACATCAGCAACTGGTAAACCTATT

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000186335

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008813 lncRNA downstream 657712 31204925 ~ 31211308 (-) True XLOC_004212
TCONS_00008812 lncRNA downstream 666181 31200219 ~ 31202839 (-) True XLOC_004211
TCONS_00008053 lncRNA downstream 1504215 30361628 ~ 30364805 (-) True XLOC_004204
TCONS_00008040 lncRNA downstream 1907119 29961114 ~ 29961901 (-) True XLOC_004198
TCONS_00008036 lncRNA downstream 1948018 29918315 ~ 29921002 (-) False XLOC_004197
TCONS_00008814 lncRNA upstream 277590 32150218 ~ 32157526 (-) False XLOC_004216
TCONS_00008815 lncRNA upstream 282326 32154954 ~ 32156318 (-) True XLOC_004216
TCONS_00008816 lncRNA upstream 493284 32365912 ~ 32391388 (-) True XLOC_004217
TCONS_00008817 lncRNA upstream 584688 32457316 ~ 32563702 (-) False XLOC_004218
TCONS_00008818 lncRNA upstream 594556 32467184 ~ 32538409 (-) False XLOC_004218
TCONS_00008070 mRNA downstream 592940 31258116 ~ 31276080 (-) False XLOC_004214
TCONS_00008071 mRNA downstream 592956 31272649 ~ 31276064 (-) True XLOC_004214
TCONS_00008068 mRNA downstream 634436 31218956 ~ 31234584 (-) False XLOC_004213
TCONS_00008069 mRNA downstream 642442 31220626 ~ 31226578 (-) True XLOC_004213
TCONS_00008066 mRNA downstream 696744 31168697 ~ 31172276 (-) False XLOC_004210
TCONS_00008074 mRNA upstream 703672 32576300 ~ 32723851 (-) True XLOC_004220
TCONS_00008079 mRNA upstream 1725585 33598213 ~ 33612433 (-) False XLOC_004228
TCONS_00008080 mRNA upstream 1725986 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008081 mRNA upstream 1973812 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008082 mRNA upstream 1988549 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008067 other downstream 696766 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 1360229 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 1504196 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008048 other downstream 1713185 30153818 ~ 30155835 (-) True XLOC_004201
TCONS_00008043 other downstream 1767763 30101142 ~ 30101257 (-) True XLOC_004200
TCONS_00008075 other upstream 858537 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008078 other upstream 1498623 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008088 other upstream 2093530 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 2482916 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 2593767 34466395 ~ 34466513 (-) True XLOC_004247

Expression Profile

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