RNA id: XM_026938268.2


Basic Information

Item Value
RNA id XM_026938268.2
length 2445
RNA type mRNA
GC content 0.44
exon number 10
gene id fbxo15
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13954557 ~ 13968352 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCACGGTTGAGTTTGGACCTCTCCAATATGGCGGAGGCGATGACGTCTCGCTCTAATGAGTTGCTGGTTGCTGCCGGTGGAGCCGCGTCTGGCGATTGAACTGCGTTGTCTTACAATTGAGTGTAAACCTCTCCAATATGGCGGAAGCACTGACGTTTCGCAGTAGCTAACCCCAACGACTTCATGCTCGTAGTGTTGCCGTAGTTACCGGACGCGGCCACGCGCCTATTAGGTTTCACTGTAAAACAAATATCCGTGTAATGGACTGAGGGAAGTTTCTGAACTGCTAAAGCGAAACAAGGCCGGTCTAACTGTACAACAGAAACGCCGAGATGAACTCCCAGAGACTGAAACGCATTATGGTCCACCGATCATCCACCTGTCCCAAACCTCCACCCAGATCAGTCAGGAGCTCTGAAAACTACATAGAGAGGATGCCACCAGAGGTCACTGAGAAGattatttcatatttggatGCAGGATCTCTTTTCTGCCTTGGCTTCGTCAACAAGCGGTTCCATGAGCTGGTTGACAACAATGCCATGTGGTATCGCTTTTACACCTGGCAGCGAGCAAAAACGAAGACATCCAGGCTAATAAAGGATGTGACAGATGGAGTGGACATGGCCAGCATTCAGGAAAAGCCTATGGGATACTGGAGGAGAGTTTTCTTTAAAGAACTGGCTGGTCATAATGGAAGCTGgaagaaaaaactaaaatccaTTCATTCTTACACCGGACTGCCAATTCGAACAGCTGAAGTTCTCAGGAGTTTTGGTGTCATGTGGGAGATCACAGTGAAGGAAGCAAGAGGACGTGAGAACAGAATTAAACACACTCACGTGTACTTCGGCCAAGCCTCTCTGACTGTTGGCTGGAGTTCAGGAAACTGGCCAATTCTGGATAAACCCACTACACTAGAGCTGCATGGAGTGATGCTTGTGCCCATTAACTGTCCAATCACATGCAGacCAGGCTGGAGATCCCTCTTAAGTAAAGTGGTGGTGAAGAAGGACGGTAGCAAATTGTGTGGTTCAGACAGGCTCATCTCTTTGCTGTACATTGAGAAAGATGTAACTGTGGGGGTTTGGCAGAAGCAACAGGAAATTGCATTTGTCTTAGTGAACTTACATTATCACAGACTTGTGGAAAGAAATCTTCTGGGGTCATCCACCAcGCTGTATGAGCCAACAGACATGCAAGCCCCTTTTGATGACATTGATCCTGATTACGGCTTGCATAGATACTGTGTGCACCTTGAGCTGCACAACACAGTAGAAAGCATTGCGTCAGTGAGCTTTTCCCAGCTGTTCTGCAAGAAAGATCAGATTGCTGATGGTTATCTACCTTTGCAAGTtatcagtaaagaaaacagATCGCGACAAACTCCTCTGTGTGGAAAAATCAGCCTGCCTTGGAGGACCGAAGCACTACAGGGACACATCGAGcATTGTTGCATGTTGACTCTCACTGTTCTTGCTGAAGCCCAAACACCATTCTGGTGTGTTAGTGCTCCTGTAGCCATTACTAAATCAAACCACGAGGAAGTGTCATATGACTGTAATGGTGAGAGCTTCTTTATGGAATATCAGGACTCAGATGGAAAGCTGGAGATTGAGCTGGAGTGGATGGAGGAACAGAAACAGTTTGTCATGGTTAATTTAatcctttttctttccattaGCAAAGTAAACAGACACTTTAGGAGGCATTATTGATACTCCCATGGACACTTTACCTTGTTCAATAATACATACATGACACGTCTGCATATATGTACCATATACAACACTCTCTGTTTGGAACCTTGATCATATTAAACGGCTTCTGTATGAACTTTATATCTGAAGAAAAAGCATAAGTGATTAACATGCATCCCGATTTTGAaaataggaagccattttctATCAAGACTTACATCCCTGTTCCTAAATTCCCACAAGAAAACAGTTCACATTAAGGCATTACTGTCGTTTAGCATTATCAGCATTCCTCTTAGATGCTGATGTCTTAAGACAGTTGTTTAATGTAATAGCTCTCGGCTGGAGGAGGATTTTATCGCTGACGCCACGACATGCTCACACCGTTAAAACAACATTTGGCTGCGATTAGTGATGGAAGGCAGTTTTGAGGCATAAACAACCCCTCTGGATTGGGGCATAATTGGATTGCGTTTAGTCTTCAGAGGTCACTTCGACCTTGAAAACCTGCTTTTTATCAACACATGCTGGCATTTCCATTTTCTTCATCACATTGTTAGGAGGTGTGAAGCTGTAAAATGGCTTCTGTCACAAATGTTATGACCAAAAAAGTAATTAGATTGCTGGTTGTGAGAAAGCCATGCCTGAAGGTTAACCATTCTTTATCTTTGAAATGTGTTTCATTGAACCATATTAAAGAGTTGGGCAGTTTATCAAACTTTTTCTGCTAAAACATGATGATC

Function

GO: NA

KEGG:

id description
K10298 FBXO15; F-box protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392965 lncRNA downstream 195267 13758929 ~ 13759290 (-) False LOC113541105
TU392679 lncRNA downstream 540746 13412902 ~ 13413811 (-) True G331569
TU392678 lncRNA downstream 547099 13406386 ~ 13407458 (-) True G331568
TU392674 lncRNA downstream 572122 13380609 ~ 13382435 (-) True G331565
TU392669 lncRNA downstream 606700 13343614 ~ 13347857 (-) True G331560
TU393198 lncRNA upstream 498046 14466394 ~ 14466613 (-) True G332056
TU393340 lncRNA upstream 545387 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA upstream 549291 14517639 ~ 14521648 (-) False G332169
TU393312 lncRNA upstream 568904 14537252 ~ 14564704 (-) True G332147
TU393330 lncRNA upstream 575684 14544032 ~ 14634926 (-) True G332164
XM_026937887.2 mRNA downstream 87410 13765859 ~ 13867147 (-) True neto1l
XM_026937896.2 mRNA downstream 191942 13757658 ~ 13762615 (-) True LOC113541105
XM_026937955.2 mRNA downstream 200200 13749291 ~ 13754357 (-) True timm21
XM_034297986.1 mRNA downstream 204924 13738992 ~ 13749633 (-) False si:dkey-118j18.2
XM_034297985.1 mRNA downstream 206485 13737766 ~ 13748072 (-) False si:dkey-118j18.2
XM_026938180.2 mRNA upstream 248790 14217138 ~ 14223311 (-) True LOC113541290
XM_026938151.2 mRNA upstream 344734 14313082 ~ 14373453 (-) False dok6
XM_026938150.2 mRNA upstream 344734 14313082 ~ 14373453 (-) True dok6
XM_026938127.2 mRNA upstream 451546 14419894 ~ 14429370 (-) False pi15a
XM_026938126.2 mRNA upstream 451546 14419894 ~ 14429370 (-) False pi15a
TU392350 other downstream 1276624 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1276624 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 2871406 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 3023782 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 3431294 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 968538 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 997465 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 2862348 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 2862348 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 3147750 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile