RNA id: XM_026938283.2


Basic Information

Item Value
RNA id XM_026938283.2
length 5108
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC113541353
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16639105 ~ 16684971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCAGAATTCCTCAGCACTGACCGCCTCCAAATCCGCAATCTCATTCAGTAGCTCAGTAGCTGAGTGGCCGCGTCGAGGACAACAATATCTACCTCCGAgaaacacaacacaacacaacacaacacagcacagcatGTTGGAGAGACTCTTGACGTGGTGACAACTGGCCCGAAGAGGAGCTTTTTGGAATAAAATACCAACAGAAGCCCTTTCAGATGATGACGTGATGAATTTTAAACGTGTATATGTTTAGTAGCCTGTGATACACGGGGGGAAAAGCCAATGCCTGGACACTGCTTTAGATAagactaaaatgtttttaaaattattcatttaaacgTGTCCACTTTTCTTGTTAAGACAGGAGGTTTGTTTGTGCAAACATCTTTGCATGTAGATCATGCGTGAAGATTTATTGATTCTGAGCTGTTTGTGCTGTCAGGGCTGTAGATCACTTTCCAGCCTTGTGCACTTTCTTCAGGCTTTAAATCCTAAACCTGAATTACGCCTTTGATTATTCAGGCTCTGAGTTCGGTTAAAATGACTTCATCAGATAATGATGAGACTGGGAGTGACGTGTCAGAGTCTCTGGAAGTCACCAATTTCCAAAGCCAATATGGCGACTCGGGGAGTTACTACAAATCCAAAAGTTTACCAGTTCTCAACGGAGGCTGTCCAGCAGCTGACAAGGCTTTGGAACCGAAACTTCCATCTACATTCACTTCAATCCATACAGACCGAGTTGTATTTAGTGGGATGCAGGGAAAAAGTGACTCCAGCCAGCTGGACTCTCCGACCCAAACTGACTTCTCACCCTCCAGCATGTCCAGCATGGTGGGTCTAAGCGGCTCTACGCGACCCAACGGCAACAGGGCTGGAGGCAAAAAAATAGGCTTCTCTTTAGCAAGGATTGTGGGATTCCCAGCGAGGAAGTACGTCAGGGTGATTCTGGCGGACTCGAGGTGTTTCCTGTTCTGTATGTGCTACCTGACGTTCATCCAGTCGCTGATGGTTTCAGGTTATCTGAGCAGTGTGATCACCACCATCGAGAAGCGGTACAGCCTGAGGAGCTCTGAGTCAGGTCTGTTGGTGAGCTGCTTCGATATTGGAAGCCTGCTTGTTGTGGTCTTCATCAGCTACTTTGGGGGTCGGGGGCAAAGGCCGCGCTGGTTGGCCGTTGGTGGGGTTTTCATAGCTGTAGGGGCAGCTCTGTTCTCCCTTCCCCACTTCATCTCACCCTCGTACCAGATCCAGGAAGTGAACTCGTCTACAGGAAACGAGGGCCTCTGCTTGAATGGGAATGCCAGCAGCAGAGACGGCTTGGGCGTTGCGTCGTGCCCACGGGACCAGGAGGGCAAGGAGCATTCCATCTACGTAGCACTTTTCATCTGCGCCCAGATTCTGGTGGGAATGGGTTCCACACCTATCTACACCCTCGGCCCGACCTACCTGGACGACAACGTGAAGAAGGAGAATGCCTCGCTTTACCTTGctATCATGTATGTGATGGGCGCTCTGGGTCCTGCGGCTGGGTATCTCTTAGGAGGAGTTCTCATCGGCTTTTATGTGGATCCCAAAACCATAGTTAATATTGATCAGAGTGACCCTCGCTTTGTAGGCAACTGGTGGAGCGGCTTTTTGCTGTGCGCCATTGCCATGCTGCTGGTCATTTTCCCCATGTTCACCTTCCCCAAGAAACTACCCCCTCGccacaaaaagaagaagaagaaaaagcttGGGACTGATGATGATGCAACCAGTGAGGATGATGTCATGAAGGAGAAATCCAACAGCAAAGGTCAAACGGTGACCTCTTCCATGGGCTTTGGGAAGGACATCAAAGAGCTCCCCAAGGCGGCCGTGAGGATCCTGAGCAACATGACCTTCCTGTTTGTGAGTCTCTCCTACACGGCCGAGAGTGCCATCGTCACCGCTTTCATCACCTTCATCCCCAAATTCATCGAGTCGCAGTTCGGGATCCCCGCCTCCAACGCCAGCATCTACACAGGAGTGATTATCGTACCCAGTGCTGGTGTGGGCATCGTGCTGGGCGGCTACATCATCAAGAAGCTGAAGCTCGGCGCTCGTGAGTCGGCCAAGCTGGCGATGATCTGCAGCggagtgtcactgctgtgcttttCCACGCTCTTCATCGTGGGCTGTGAGAGCATCAACCTGGGGGGCATCAACATCCCATATACCACAGGGCCAACTCTGACGCTGACTCACAGGAACCTGACAGGCAGCTGCAACGTGAACTGTGGCTGTAAGATAAACGAGTATGCACCAGTCTGTGGCTCTGATGGCATCACCTACTTTAACCCCTGCCTGGCAGGCTGCAGTGCGGTCGGCAACGACAGCACTGGGatCAGAAACTACACggactgtgcgtgtgtgcagaGCCGGCAGGTCATCACTCCTCCCGCCGGTGGTCAAGGCAGTCAGCTCCAGCTGGTCATCGTGAAGACCTACCTGAACGAGAATGGTTTCGCCGTGTCTGGGAAGTGTGACCGCACCTGCAACACGCTCATCCCcttcctcatcttcctcttcatcgTAACACTCATCACTGCCTGTGCGCAGCCCTCCGCCATCATCGTCACTCTCAGGTCAGTAGAGGAGCAGGAGAGGCCGTTTGCTTTAGGAATGCAGTTCGTGTTGCTGAGAACACTCGCCTATATACCCACGCCCATCTACTTCGGTGCTGTGATCGACACCACGTGCATGTTGTGGCAGCAGGACTGCGGTGTGCACGGCTCGTGCTGGGAGTACGACGTCACGTCGTTCCGCTTCGTCTACTTCGGCCTGGCCGCCAGCCTCAAGTTTGTTGGCTTCGTCTTCATCTTCCTCACCTGGTACTCCATCAAATGCAAGGAGGATCGGCTGGAACGCCGGCGCCTGAGCCTCCCTCCGCTCGGCACAGTGAGCGAGCTTGTGTGTCAGGCAGGTGCCCGCAAGTGCCACGCACGTACTCGCTCATGCCCAGCGTTTACGCTCGATCCAACACCTCTTCACCACGGCCACAGCAGCCAGAGCTGCCCGGGAAACGCGCTCAAAGCAATAACGCCCCCAGTGCGCCCCGTGCAGGAGGTCCGCGCCCTCGTCTGAGGTCTAACTCCATCCTCTCCACGTGCCTTCCTTGATTGGGCGCAAACCTTTTCAAAGTTCAGCTGACGCCCTGCTGAGTATCACAGCTGTTTTTAAGGTTCTCATCAGCGCATATCTTcaaaaaaatttacatatttgtcAAAGCGTGCATTGTACATTGTAAAAGACATCACATGGTGCTAAGTGGGTTTGGGGGGTAGGGGTGGGGGGTCATTCCTGTTCAGTATCATGTCTTTGATATCAAAATGACTATCAAAACTTCACCACAAGCACAACTGGGAATCTGTTCTATGCAAGCTCTGCCGCTATGCCCCTCTGTGTATTGCTTTCTATTGAGTATCTCTGAATTCAGCCCGCATTCGACATGAGAGGCGACCATCTCTCCTGTCCtcactctatttctctctcctgctgtctctctttGAAAGTCCCTTTGGACGTTAGGCCAGTATGGAGGATAGAGTGGCTGTCTAGGTTGCTGGAATTTTCTGGAACTTTCCGGCAACATGGTCCCTCAGGGTTCAGTGCTGTGGCCTATTAAAGTTCTGTGAAATATGAGCAAGGGTCAGAGGAACAGTTAAAATACATCATGAGAGAACTCTTATCATTCCTTATCAtccccatcatcatcatgatcattatCCCTAGAGTGATCAGTATAGACGTAATTCCAGAATAAGATTAATGTGTAACAGTAAGCAGATAGAATAAAAATTGAACACAAAACAACATCCTTTGAGCGAGATTTGAGAGAGATGTGCTGCTCGATTCCTCTGGTTCCGGTCCTCACAGACCCGTCTCTGCTTTAGCGGTTTAATGTCTGCTCTGACGGCGCATGGTTCAATCCCAGCAGGCCTGGCCATTGCTCTCACACTCCTTCCCTCGTTGCTGACAGAAATCAGCCTGAGCACTTAAACGCAATAGTGTTACTAAACCGGCAGCAGCACATGGAGCATATTTTGATACTAATGAGAAATTTTGGTGGTATTGATATGTCCTCAGAATGTTGTAGGCGTCACCACATCTAGCACTTGTAGATGTATATTCACAGTTCTCATGCAGTTAGAAATAGTCTCTGATCATTTCAAGAGATCGGTATGCTAATCTCTATAACAAGCCAACAGGTATTACAGTAAATGCCTACGAAGAATATAAACCTCTATCCTCTGATGCTGCATCATTTTGCATAATATAATGTAGTTCATTAGGCATTTAGGATGGGTAGCACAGCATGCTGGAAATGAAACCTGTccaaatataaatctaaatttcATCCATGGAATAAGAAAAATTGAATCTCTATGTCTACTTATACATATACTTGTTTTACTACTAAgaatttatgaattaaaattttGGCCAGTTCTACTGCATTTTGATGAAACCATTGTTTGAGTATAATATTGTCAAGagagactttaaaaaaatttactaAAACAATAGCATCATTAACACCTGACCTTGAATCTTCACTTGCTCTTCAGTCTTCAGTCTCAACCACTGTACTTGAGATCTTTGAAATGCAATTCTTCCTTATTATTAGTCAAATTGTTTCACTGTAAAATGAACAGAATCAAATGAGAAATctgtgacagatttttttttaaagatatataaaTACCGGATATCAAACCAAACAAGTATTCCCCATCAGTGTTTTCACGTATAGACGATTTGTAACACAGGGCAGTCATGACGTAACTGGGCAGTGttgcagttttgttattttgGGCTTGGAGCTCCTGCacattggatttgaaataaaaaaatttgttaaAGTTAGCTTTGATTCAAGGAAATGTCTGAAGACTTGAACAGTTACAGAGTCAATCCCTTCATATCCAGTGTGTAGAAaaccaaaataacaaaaatgcttTCAGTGAAAAAGTACTCAAGGACTGTGCTGTGAAGTACAAAGAGGATATACTGCTAGTAAATAGATTTTTTGTCTAAAACTTAACAAATTTAGATTAACttttgaaaaagaaacacataatGA

Function

GO: NA

KEGG:

id description
K14356 SLCO5A; solute carrier organic anion transporter family, member 5A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394501 lncRNA upstream 5322 16605148 ~ 16633783 (+) True G333148
TU394510 lncRNA upstream 19016 16595781 ~ 16620089 (+) True G333157
TU394160 lncRNA upstream 418160 16219553 ~ 16220945 (+) True G332859
TU394074 lncRNA upstream 536508 16102271 ~ 16102597 (+) True G332791
TU394073 lncRNA upstream 536893 16101750 ~ 16102212 (+) True G332790
TU394614 lncRNA downstream 47945 16732916 ~ 16829979 (+) False G333232
TU394612 lncRNA downstream 87032 16772003 ~ 16829979 (+) True G333232
TU394631 lncRNA downstream 203935 16888906 ~ 16889729 (+) False LOC113541357
XR_003404172.2 lncRNA downstream 203966 16888937 ~ 16890161 (+) True LOC113541357
TU394629 lncRNA downstream 208035 16893006 ~ 16897855 (+) True G333244
XM_034298094.1 mRNA upstream 7053 16537653 ~ 16632052 (+) True sulf1
XM_026937906.2 mRNA upstream 109988 16444663 ~ 16529117 (+) True c22h8orf34
XM_026938048.2 mRNA upstream 195961 16326985 ~ 16443144 (+) True prex2
XM_034298091.1 mRNA upstream 195961 16352774 ~ 16443144 (+) False prex2
XM_026938232.2 mRNA upstream 420092 16201985 ~ 16219013 (+) False LOC113541322
XM_026937856.2 mRNA downstream 120675 16805646 ~ 16818439 (+) True LOC113541068
XM_026937855.2 mRNA downstream 120678 16805649 ~ 16818439 (+) False LOC113541068
XM_034298105.1 mRNA downstream 120679 16805650 ~ 16818439 (+) False LOC113541068
XM_034298104.1 mRNA downstream 122245 16807216 ~ 16818439 (+) False LOC113541068
XM_034298106.1 mRNA downstream 125973 16810944 ~ 16818439 (+) False LOC113541068
TU393912 other upstream 1072442 15566175 ~ 15566663 (+) True G332636
XR_004576981.1 other upstream 1374518 15251635 ~ 15264587 (+) False si:ch73-173p19.2
trnat-agu_17 other upstream 3253831 13385201 ~ 13385274 (+) True trnat-agu_17
TU392569 other upstream 3380689 13257894 ~ 13258416 (+) True G331476
TU392341 other upstream 3926427 12706939 ~ 12712678 (+) True G331263
TU394735 other downstream 422501 17107472 ~ 17110027 (+) False hhatlb
TU394736 other downstream 422501 17107472 ~ 17110027 (+) False hhatlb
TU394798 other downstream 600111 17285082 ~ 17300011 (+) True G333388
TU394792 other downstream 602189 17287160 ~ 17302004 (+) False G333388
TU394797 other downstream 602189 17287160 ~ 17295054 (+) False G333388

Expression Profile