RNA id: XM_026938285.2


Basic Information

Item Value
RNA id XM_026938285.2
length 2749
RNA type mRNA
GC content 0.48
exon number 8
gene id pcyt1ba
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19498302 ~ 19506536 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGTTCAGCAGCCTGTTTCCTTGTTgctctgatggtgtgtgtacagactgtgtgtgctgtgtgaaggGGAAAAGCTGTGGCTTTGTGGATCTCTCTGCTCTGGCtggaggaggagtggaggagcATCAGGAGGagggtgtgtgagggagagGGGATCGAGGTTTCAGGGGGTTGGGAGAACATCTTCACCGGTGGAGAGAGAGGATTCAGGCAGCTCCATACTGATGCTGAGTCAGAGACAGGTGGATCCGTGGGCCTTTGTCTCTGGAGCCTCGGGAGAAGATGGAGGAGCTGGAACACACCTGCCCTCATCCTCGGACGACTCTCACAGAACCCGCCATATTTGCCCAGGAGACGAGCTGCGAGTGTCGAGCGCCCCATGAGAAGCTGAGTGTTGAACAGGCTCGACTCGGCACTCCCGTGGACAGGCCTGTGCGCGTCTATGCAGATGGGATTTTTGATCTTTTCCACTCCGGTCACGCCCGAGCGCTGATGCAGGCCAAGAACCTCTTCCCCAACACGTACCTGATAGTCGGAGTTTGCAGTGATGAACTCACTCACAAGTACAAGGGCTTCACGGTGATGACGGAGGAGGAGCGTTACGAAGCGTTACGGCACTGTCGCTACGTGGACGAGGTGGTGAGAGACGCTCCCTGGACCCTCACGCAGGAGTTCCTGGAGAAATACAAGATTGACTTTGTGGCACATGATGATATCCCATACTCCTCGGCTGGATCTGAGGATGTGTACAAACATATAAAGGAAGCAGGGATGTTTGTGCCCACTCAAAGGACAGAAGGGATTTCCACGTCTGACCTGATCACTCGTATCGTGAGAGATTACGACGTTTACGCCAGACGCAACCTGGAGCGCGGCTACACGGCCAAGGAGCTGAACGTCAGCTACATCAACGAGAAGAAGTACCGTCTGCAGAACCAGGTGGACAGGATGAAGGAGAAGGTGCGGACGGTGGAGGAAAAGTCCAAACACTTCGTGTACCGCGTGGAGGAGAAGAGCCACGACCTTATACAGAAATGGGAGGAGAAATCCCGCGAGTTTATCGGGAACTTCCTGGAACTCTTCGGTCCTGATGGCACGTGGaAGCAGATGTTTCAGGAGCGCAGTGGCCGTATGATCCAGGCGTTCTCTCCCAGCGGATCTCCGAGCAGCAGTCCTCCCAGGGATTTCTCTCCATCCCGCTCTCCCTCTCCTCCGTCCCGCTGGGTCATGCCGAGAACCTCGCCTCCCTCTTCTCCCAAAGGCGCCTCGGCCTCCATCAGCAGCATGAGCGAGGGAGACGAGGACGAGAAGTGAGGATGAGGAGCGGGGACGAGGAGCGAGGACTCACTCACCcaaaacacctcacacacacacacacacacacacacacacacacacctttcgtCTTTACCTGTACACTCCAGCAGTGACGAGCTTCACGAGTCtcctcatggggaaaaaaaaaacaaaaaacgtgtAAATATTCTGTATGCAATACGAGATCGATCACGTCCTCTTGAGCTTTTCCGATTTTAACGAGTTCATATGAAAGCCATTGATTTATTCTCTTTAGCAGAGAGGAGATGGAGgcgaggagtgtgtgagtgatttgCCTTTTCTTGCTCAGGTTTGACTGAAATGTAAAGACCGTCCGTGTGAAGTACTGTACATCTCTGTCTGAggtttttatttgcatatttcaaGACAGAGACACTTTAAGCTATTCATTCTGTTTGTTATTATCCTCCATAtcattaaaggaacagtttggaCAAATAAACCCCAAAACGTCCACAGCGTCCCTCTTAATGCCTAATCAGCGCAGTGGATCAGCTGAGACGTCTTCAGTGTCCGACGTCTGCTGCTTTAGTTTCGCGCTGAAGCTCCGAGGTCTGTTTCACAGAGACCGCGATTCACGACTTCACCAAGACTGACACCTGAATCgaaattttctcaattctatgcaaattagataaGACGCTCTAAAGATAATGtaagacaaatccaaacgatcgATTCGATCGATTCCTCGGACCAGTCCTGCGCTTGGTGCGGTGCGACGTTTCTTCACTTCcccgctcacaactttagttcttACCTGCGAATAGATCccacaaaaaaaatggaagaagaccttataactgtggtttcatcttatcctgtcatatgtGACCTTACGTTAAATGAGTATAGAGAAAATTATGTaggaaaataaatcttggaaggaagtagcagagatcttTGGTGCttttggtgagtgtatatagctAGAGAATTAGCTcgctaatctaatctaattgctaatctaatctgagaatgtaacgtaaatcaaacaactgattttcacactgattagtgttatttaaattgtgttttaCTAGCTACCTTTAGAAGCGAAATATAGCTACTAGAtctcaaacaaaaacaaaaacgatggacaggccacgcccaaaTAATAGCGATAATAATAGCTCTCGTGACACTTTGGTCTGATTATAAATTCAGGAAGCTGATATTAAATAAGCTAAATCACTTATAAATGTACAAACTCCGCCTTCAGACCTCAGGCCACGCCCCTTACCCGAGCCTGATCCTGGTGCGGAGTGAGTTCAAGATCTTACGATACGATTCGTTTCGATCGAGGAAATGCCACTGTAGGATGATTTTCACGTGCACATTTAGTGCACAGTGCTAAACTGGAAGCCATAAGGTTCCATTATTTGTTAGcaatattagcaaaaaaaaaaa

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00968 PCYT1; choline-phosphate cytidylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396394 lncRNA upstream 137566 19317857 ~ 19360737 (+) False dap
TU396400 lncRNA upstream 137566 19317857 ~ 19360737 (+) False dap
TU396406 lncRNA upstream 146551 19345889 ~ 19351752 (+) True G334733
TU396221 lncRNA upstream 565052 18933049 ~ 18933251 (+) True G334575
TU396219 lncRNA upstream 565593 18932502 ~ 18932710 (+) True G334573
XR_004576958.1 lncRNA downstream 14829 19521365 ~ 19522260 (+) True LOC117595782
TU396487 lncRNA downstream 54566 19561102 ~ 19589060 (+) True G334806
TU396561 lncRNA downstream 130332 19636868 ~ 19703804 (+) False cip2a
TU396588 lncRNA downstream 198149 19704685 ~ 19707006 (+) True G334888
TU396939 lncRNA downstream 259934 19766470 ~ 19766826 (+) True G335214
XM_026938115.2 mRNA upstream 61543 19429768 ~ 19436760 (+) True arxa
XM_026938116.2 mRNA upstream 62756 19429768 ~ 19435547 (+) False arxa
XM_026938081.2 mRNA upstream 102413 19391973 ~ 19395890 (+) True ndufb4
XM_026938102.2 mRNA upstream 137566 19339176 ~ 19360737 (+) True dap
XM_034298163.1 mRNA upstream 141706 19339166 ~ 19356597 (+) False dap
XM_034298283.1 mRNA downstream 72774 19579310 ~ 19593452 (+) True mtmr6
XM_026937824.2 mRNA downstream 94029 19600565 ~ 19603770 (+) True amer2
XM_026938183.2 mRNA downstream 171968 19678504 ~ 19683656 (+) False si:ch73-264p11.1
XM_034298169.1 mRNA downstream 173514 19680050 ~ 19683656 (+) False si:ch73-264p11.1
XM_034297890.1 mRNA downstream 182494 19689030 ~ 19703771 (+) False cip2a
TU396392 other upstream 70367 19339206 ~ 19427936 (+) False dap
TU396524 other downstream 69575 19576111 ~ 19577073 (+) True G334838
TU396585 other downstream 171945 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other downstream 173461 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396960 other downstream 282047 19788583 ~ 19789058 (+) True G335231
TU397154 other downstream 653864 20160400 ~ 20163106 (+) False ccl20b

Expression Profile