RNA id: XM_034297803.1


Basic Information

Item Value
RNA id XM_034297803.1
length 1776
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113541040
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19711629 ~ 19716339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGTACTTCGGGACACATTATGCAGCAGGCGATTTGGActtttgtgctgttttggaCAATACCACTGGCCACTGGAGGAGACGTCAGAGTGACCTGCGTCTTCACCAGTGACTGTGTGCTTCCCTGCAAGTCAATGTATCATGACATCATCAAGTGGTACAAAGATGGTACAGAAAATGCAGTCCATACTTTCAACAATAATAAAGATCATCTGGAGTACCAGGATGCTGCATTTAGAGGACGGACGTCTCTGTTCACGGATCAGATCTCTCAGGGAAATgtctcactgctgctgagaaTGGTCAGGGTTGAAGATGAGGGGATATACACCTGCCACACCTCCTCCAGCTTTGAGGACCTGGAGATAATTGTCTGGCTGGATGTGAAGGCCCCAATTAAAAGGGTGGATATTAAATTTACAGATAAAGAAATTACCTGCAACACAAGCAAAGTTTACCCAAAACCAATAATCTCTTGGTACGAAATTCCCAGTCTACAAACAAATATCACAACAGAGACACAGAAGGATGATCAGGGCCTGTTCTCACTGAAGAGCATTTTCACATATGAACAAGATGAACAAAGCGACACAAACAGAAATCAGTCAGTCAAGCAAATCACCATATACACCTGCTCCATCAGCTTCGAGGACAAGAGTCAGACTTACACCGCCAGCCTGAGACAAGACGCTGGAGACTACACCATCACCCTGAGATTTGGAGAGTCTTCTATCATTCTGAAGCCACAACTAAATAACATCCCAGAGCAGCTGGCAGGAATAAACGTCCATCTTGCACATGACGGGAAAGTCACACTCCACAACCTGGACATGGACAAACATACAGGAACCTACATATGTGAGACATTTAACGCACAATCCACCATTGATGTGGTGCAAACCTCAGTGCAAATCATATCAGATATCCACAATAATGGGATTGCTGAGGTTTTGGGTGCAGTTGTTGTTATCATGGCCATCATATCTCTTCTAATCTACTATTTATGGAGAAGAAAAGgacagaaaaaaagaaacaaagaaaactcAAGAGAAAATGAAGTAAACGAAGAAGTTGAGCTAGAGGAACCTCTTTCAGGAGAAAACCCTAGCAGTGATACAGGTTCAGACAGTGATTTCTGAGGATCTCTTCAGCTTTAACACCAAACATCATGGAGACAATGCAAACAGGGGTGATTCCACGGAGGGCTGAAATGTCAATGCCCCCCAATGCCCCCCCAGGCaattaaacaggaagtgttcaTACAAGCCATTGTTGAAAagctggaagaagaagaagcctttatttgtcacatatacatttcagtgaaagacttttcttcacatatcccaggtTGTTAGGAATTTGGGGTCAGAGTGAAaagtcagccatgatacagcgcccctggagcagaaagggttaagggtcttgatCAAGTTTTTAACAGTGGCAGATTGGAGGTGCTGACATCAGAGACATGACAAGACttcatgctttcttttttatattaaatttatttatttattagccatatttatttacatttattgttagaACATGTATCTTGGGCTcccgagtggtgcaacagaaaagcgttcaccctGTCACCCCATCATCCCCTaacacagcatgagcagaaaAGATGCAGTTACTGTAGCTGGCTTCACGTggctcagaggaagcatgtgatggCCTTGTCCAATGGGAAGGTAGCTGCCATATAACAGGGCAGAGCTGGCTGAAGGGTGGGAACTGGCCAGGATTAAATTGTGGagaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396860 lncRNA downstream 147167 19560978 ~ 19564462 (-) True G335150
TU396859 lncRNA downstream 160099 19551040 ~ 19551530 (-) True G335149
TU396813 lncRNA downstream 193320 19507088 ~ 19518309 (-) False pdk3a
TU396814 lncRNA downstream 283371 19391964 ~ 19428258 (-) True G335105
TU396959 lncRNA upstream 56514 19772853 ~ 19773057 (-) True G335230
TU396961 lncRNA upstream 72244 19788583 ~ 19789058 (-) True G335232
TU397159 lncRNA upstream 163553 19879892 ~ 19902336 (-) True G335404
TU397160 lncRNA upstream 172741 19889080 ~ 19892463 (-) False cnksr2a
TU397218 lncRNA upstream 343685 20060024 ~ 20061159 (-) True G335460
XM_034297806.1 mRNA downstream 168 19704541 ~ 19711461 (-) False hhla2b.2
XM_034297804.1 mRNA downstream 1313 19704541 ~ 19710316 (-) False hhla2b.2
XM_034297807.1 mRNA downstream 1317 19704541 ~ 19710312 (-) True hhla2b.2
XM_026937881.2 mRNA downstream 35323 19671500 ~ 19676306 (-) True plcxd2
XM_034298013.1 mRNA downstream 48274 19609037 ~ 19663355 (-) False phldb2b
XM_034297858.1 mRNA upstream 7497 19723836 ~ 19735685 (-) True hhla2b.1
XM_034297843.1 mRNA upstream 34243 19750582 ~ 19795067 (-) True adgrg2a
XM_026937996.2 mRNA upstream 85235 19801574 ~ 19815297 (-) False ptchd1
XM_026937995.2 mRNA upstream 85235 19801574 ~ 19815296 (-) True ptchd1
XM_034297815.1 mRNA upstream 115671 19832010 ~ 19848495 (-) False phex
TU396884 other downstream 107936 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 132709 19576108 ~ 19578920 (-) False nup58
TU395862 other downstream 1191424 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 1268634 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 1331895 18379649 ~ 18379734 (-) True trnay-gua_4
TU397303 other upstream 463073 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 526181 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 530227 20246566 ~ 20248461 (-) False otos
TU397621 other upstream 814283 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 893893 20610232 ~ 20612309 (-) True G335788

Expression Profile