RNA id: XM_034297806.1


Basic Information

Item Value
RNA id XM_034297806.1
length 2976
RNA type mRNA
GC content 0.40
exon number 7
gene id hhla2b.2
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19704541 ~ 19711461 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aataatctaacCCATTTAGCCACACTCCAGCCCTGGAGCTCATCGCAGGGGAACTTCCCTGAACGGTCCCAGTCATTTACTGCAGACCGAGTCCAGGGAGAGTGGCGTTTTTGGGGAGTTGCAGCTGGACACAAAAAGGAGGAGAACCACTGGAGTAAGAAATTTACTCAGGATTGAAAAAGAAAGCAACTCTTAGCGATCTCACGCTTTTGGAGGAAACTACAGGATACATTATGAAGCAGGCGATTTGgacttttttgctgttttggaCAATACCACTGACCACTGGAGACGTTACAGTGACCTGCGTCTCAACCAGCGACTGCGTGCTGCCCTGTACTTCTCCTTATTACGACATCATTCACTGGTATAAAGACGGCAAATCGAACTCCGTCCATACCTTCTACGATAAAGCAGATCATCTAGAGTTCCAGGATGCAGACTTTAAAGGACGGACGTCTCTGTTCAATAATCAGATCTCCCAGGGAAATGCCTCACTGTTGCTGAGAGCAATCCGATTCCAAGACGAGGGCAGATACAAGTGTTACTCCGCAACGAGCTCTGTTAACAAAGAACAGTTTGTCTTGCTAAAAGTCAAAGttccagtTAAATGGGTGGATATAAAAATGACAAGTGAAGGAATTTCCTGCAGCACAAAAGATGTTTTCCCAAATCCCAAAATCTCCTGGTACAGAGACGGCAGCTCAGAAAATACGTTTACTGTGAACACGGAGGGAGATAAAGAGCGTCTGTTCTCACTGAGCAGtgctctctctcagtctgtcaaAGAAAACACCACATACAGCTGTGCCATCAGCCTCGGGGACGAGAGTCAGAATTACATCGCCAGCCTGAGAAAAGAGAATGTTGAGATTTATCCAGGACAAGATGCCGCTATTCACTGTCCTGTCTCTCAGGAGAACCCTGGAATCAACATCACCCTGACGTTTGGTGAGTCTTCTATCACTCTGAATTACAGCCAAAGGTCACAGCCACATACCTTCAGGGGAAAAACGTTCCATCTCGCACATGACGGGACCGTCACAATCCACAACCTGGAGAACGATAAGGATTCAGGAACGTACATATGTGAGAGCTTAACCACAAAGTCCAGAGGGGTGGTGCACACCTTACTGAAAATTAATTCAGCTAACCACCATGTTGGCGTTGgcgttggtgttggtgttggtatTGCTGTTAGTGTCATCATCGTTGTCATCGGTATCATAGCTGCCATAATATACTGGATACGGCGGAACAACGGTGAGATCACTTCAGTGGACACaagtcagagagagacaaatgaaGAAGATTCCCTGAACCAACCAGCAGAATGAGGAGGTCACAGGTCTCTAATCTGAAAACACCAacctcattattttattaagttaACATTCTCAAAGTCAGAATTCCCACATTgcactttgtcttttttccatTGGTGCTTATGAAGGAAGCTCAGGCTAATagttaaacattttctttgatGAAAATAGGGAGAGGATATATTTTATGTTCATGTCTCTATGTCTCTTATGTTCATGTCTCTGTTAACCACGTATAAGGGCAAAAAAGGggaaaatattcaaaaacaatcaaaaacctGTGCTGAAAAGcaatagaaacaaacaaaaatgaataattaggACTACAGCAGTTGTTCAGCTCTAAACTGATTGTAGTCATCTGTAGACCTTAAGTAGCCCGCAGTCAGGTGCTCGCACAATcatatttggtttaaaaaaaaaaagtaataccTGCTAACAGAGATGGACATCCAAGTTAacgttaacacacacacacagttcattaCAAAGTAGCTTGTGCTGTTGCTAACGAGGGTCTTCAGGTGAAACTGGATATCGCCAATGATATTAATTACTAGACacatacattaaattattattgtgattttcttttgtctgttattctgtttctattgtctgttttttttacaaCAATAATCCATACGCTAATAAATATAGGTAGCTATTGTTAATGTAAACACATGCTTAGTAatttaatactactactgctaataataataataataataataataaggtacAATGTTACTTCAAGGTTCAAGGTCAAGTGTTGTGTGTCTGTTAGATTCATCCTCTCAGACACACTGGGCCTGAGTGGTGTTTGAATTCTGTAGTCAATCCGTTCAAAGAGCCACCGCAGTGACACCGCACTTTTTTCCGATCTTCTCTAACCCTCAGAGGTTTCGTTTCAGCTAGCTGATCTGATGTGAAGTGTCTGCAACAGACCTTCACTGAGTGGAAATGGTGAAAAGTTTGCGACGTAGGTTTGCTAGCCATCGTCTCCTGAGATCACTCTGAGCTGTGGGAAGCTGTGAAAGTTTAAAGCTCTTGAATATCTgtgcagagacacagacacagcagtCTACATGAGTTGTGTTTGAAAAtttagcaagctaacattagcttagATCAGCTTAGCAAGCTAACAAAGTTAATACCTAAAAGATGAATCAACTATCAACATATCAGACAACATAACGAAAGTAAATTATAGATTAAACTAGCGATTAATCTATACGTGATACTTGGTGCTAATATCTGGTTCATTACTGCTGTTTATCTGGCGTCTGTTTTGAAACGTCTTTCAGAGTGGCCTTGTAGGGAAAgagggcggagctaatttcagggccagaaaacaGAACCTGAtgttatttaatgcatttcGCTGTTTCCAGTTATTCTTTTGTATCCTTGAAATGACAAAGTGCCTTGAGGTAAAAATATGAAGGATTGAGGATCAATTTAATTGCATATGGAGAAACTACTGCGACTGGAAGATTAACAATCAATcgtgtttatatgtgtataaaatatgaatgtatatacactgtatatgtataaatctatttttatatattatattcttgTATTTATATCATGTTTTCACATTTGTGATACTGTGAATTAAGAATAAATTCACATGTataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396860 lncRNA downstream 140079 19560978 ~ 19564462 (-) True G335150
TU396859 lncRNA downstream 153011 19551040 ~ 19551530 (-) True G335149
TU396813 lncRNA downstream 186232 19507088 ~ 19518309 (-) False pdk3a
TU396814 lncRNA downstream 276283 19391964 ~ 19428258 (-) True G335105
TU396959 lncRNA upstream 61392 19772853 ~ 19773057 (-) True G335230
TU396961 lncRNA upstream 77122 19788583 ~ 19789058 (-) True G335232
TU397159 lncRNA upstream 168431 19879892 ~ 19902336 (-) True G335404
TU397160 lncRNA upstream 177619 19889080 ~ 19892463 (-) False cnksr2a
TU397218 lncRNA upstream 348563 20060024 ~ 20061159 (-) True G335460
XM_026937881.2 mRNA downstream 28235 19671500 ~ 19676306 (-) True plcxd2
XM_034298010.1 mRNA downstream 41186 19609037 ~ 19663355 (-) False phldb2b
XM_034297803.1 mRNA upstream 168 19711629 ~ 19716339 (-) False LOC113541040
XM_034297802.1 mRNA upstream 168 19711629 ~ 19716339 (-) True LOC113541040
XM_034297858.1 mRNA upstream 12375 19723836 ~ 19735685 (-) True hhla2b.1
XM_034297843.1 mRNA upstream 39121 19750582 ~ 19795067 (-) True adgrg2a
XM_026937996.2 mRNA upstream 90113 19801574 ~ 19815297 (-) False ptchd1
TU396884 other downstream 100848 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 125621 19576108 ~ 19578920 (-) False nup58
TU395862 other downstream 1184336 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 1261546 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 1324807 18379649 ~ 18379734 (-) True trnay-gua_4
TU397303 other upstream 467951 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 531059 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 535105 20246566 ~ 20248461 (-) False otos
TU397621 other upstream 819161 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 898771 20610232 ~ 20612309 (-) True G335788

Expression Profile