RNA id: XM_034297824.1



Basic Information


Item Value
RNA id XM_034297824.1
length 2334
RNA type mRNA
GC content 0.59
exon number 12
gene id cep85
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 831845 ~ 843562 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ATGGGCCTGCTGACAGCTGCTCTGCGGAACTGCGCGGAGACTTCCGaATCGTGCAGCTCCAGCAGCAGTCCGTCCTTCCAGCCAATCCGGAGTCAGATTCCGATCCCCACCGCCCATGTCATGCCCTCCACGGCCCACAATCCTTTGCAGCGACCCGCAGACTCCcgctccagctcctccagctcCAGATCGTCCCTCTGTAAATCCGCATCGTCCCCGAACCTGGAGGCGCAGGACGGAGGCGGAGTCAAACAGGACTGTCTGAGTCGCTACCGCAGCCTCGTCAACGGGTTGGACCACTCGCTGTTCCCCGGAGCGGACCACAACCACACGCGGCTGGACGAGGGTCAGGGCTTCGAGACGCCCGCCGTGGAGCCGACGCTGAACCAGTCCGCGCTGCTCGGAGGATTCGGACCCGACGTCAGGATGAAGCTCCACATGACCGGGCTCGGGGACGGCGCCGAATATCGGACCGACGCCTTCCATAACGCTTTGGATCAGACCTATAAGGTGTTGCCCGAAGCTAGAACGGGAATTCCGTCCTCCTCGGAGTCGTACGCCAAAACGAAGGCGCATCCGGGCGAGAACATGGCCGACTGGCAGCAGAAATTCGAGAACCTGCGAATGCAGGTGGAGCAAATGCAGGTGAGAGAGGGAGCTCTCTCAGTACTTTCGCCTCTGTATCCGTCTCCTCTGCAGTCCGAGAGCAGTAAATGGGAGGCGGTGATGAAGGCCAACGAGAGTCTGCTGAAGGAGAAGGAACTCATCATtgacagGCAGAAGCAGCAGCTGTATCAGCTCGAGCAGCGCCTCAGAGAGAGCGAGTTACAGATCCATGGAGCTCTGATGGGGCGAGGAGCTCCGTTCACTGACGTCTGTCTGCTCAGACTGCAGgaggCGCAGCGTGAAAACGCTTTCCTGCGTGCCCAGTTTGCCGAGCGCAGCGACTCGTTCGCTCAGGAGAAGCTGGAGGCGGACCGGCGTCTGGGAGCCGTGGAGGCGGAGACTCAGCGTCTGAGCGAGAGTCTGAAGGAAAGCGCGGAGAAACACGCAGAGGAACTGAAAAAGCAGGAGGAGAGGatcCGTAACCGAGACAAGCACATCAACAGCCTGAAGAAGAAATGCCAGAAGGAGGCGGAACAGAACCGAGAGAAACAGCAGCGCATCGAGACGCTGGAGCGTTACCTGGCCGACCTTCCCACCATGGAGGACTACCAGAGCCAGAGGAAACAGTTGGAGGCAGCAGAACAGAAGGTGGATGAGCTCCAGGGATTGGTGGAGGAACTGGAGGCTCAGCTGAAGGAGGTGAGAGCCGCCAATCGCGCTAAAGACGGACAACTGGAGGAACAAAAACGCAGAGAGAGGGAGCTGCTCGCTACGGTTActagTCTGCAGGCCCGAGTGCAGGAGGGGTTGGACGATGGAGCTCGATTGCCGTCTCTGGACGTCGAGAAGCTCCGAGAGGAAAACGTGACTTTGAAAGAAGAGCAGCAGAAACTCAAAAAGGTTATTGAGAAGCAGCTGAGGATGATGGAGCAGCTCGGCTCGCAGATCAGGaGCGTGCAGCAGCAGCTAGCGGAGGAGGAGAGCGGCGGTCAGGCTCTGAGAGACGAGCTGAACTCGAAAGATCAGCAGCTGCTGCAGTTACGCTCGGCTGTGAAGGAGctgtcTGCGCAGAACCAGGAGCTGATGgagcagagtgtgtgtctgcgtgagCGTCTGCAGGCCGAGTCGAGTGTGTGTGACGTGCGACTCACTCAGCAGCTGCTCAATGAAATGGCGTTGTGTCTGACTGACCTGCGCTCCCTCTGCAGCGTcctcacacacaccgcacacggCCGAGACCCCAACCTGTCCCTGCTGCTGGGGATCAGcgccCCTGCTGTATCAGAGCCGTGTGATGATTGGCTGAATCCCGCAGTTCTACAGAAGAAACTCCAGGAGGCGCTGCAGCTGAGACGAGACGTGGAGGAGCTGCGGAACACCGTCTCAGACCGCTACGCTCAGGACATGGGGGAGAACTGCACCACCCAGTAACGCAGAACCCACAGAACCCGAACTGCACCACACAGTAACGCAGAACCCACAGAACCCACAGAACCCGAACTGCACCACACAGTAACGCAGAACCCACAGAACCCGAACTGCACCACCCAGTAACCCAGAACCCACAGAACCCACAGAACCCGAACTGCACCACACAGTAACGCAGAACCCACAGAACCCGAACTGCACCACACAGTAACGCAGAACCCACAGAACCCGAACTGCACCACCCAGTAACGCAGAACCCACAGAACCCGAACTGCACCACACAGTAACCCAGAACCCACA

Function


GO: NA

KEGG:

id description
K16766 CEP85; centrosomal protein CEP85

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 78402 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 78402 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 118044 713395 ~ 713801 (+) True G324197
TU384065 lncRNA upstream 223143 607612 ~ 608702 (+) True G324161
TU384063 lncRNA upstream 224302 607045 ~ 607543 (+) True G324160
TU384216 lncRNA downstream 467349 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 486085 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 495966 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 497563 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 534984 1378546 ~ 1378940 (+) True G324328
XM_034298117.1 mRNA upstream 15700 806641 ~ 816145 (+) True si:dkey-199f5.8
XM_034298115.1 mRNA upstream 48879 774289 ~ 782966 (+) False psmc4
XM_034297823.1 mRNA upstream 86325 719389 ~ 745520 (+) True gramd1a
XM_026911138.2 mRNA upstream 151475 674868 ~ 680370 (+) True LOC113524791
XM_026911162.2 mRNA upstream 167869 658481 ~ 663976 (+) True pycard
XM_034298120.1 mRNA downstream 14548 858110 ~ 893602 (+) False atp2c1
XM_034298121.1 mRNA downstream 22832 866394 ~ 893602 (+) True atp2c1
XM_034297868.1 mRNA downstream 60901 904463 ~ 906704 (+) True rpp25l
XM_026911498.2 mRNA downstream 60901 904463 ~ 906704 (+) False rpp25l
XM_026911499.2 mRNA downstream 60901 904463 ~ 906704 (+) False rpp25l
XR_004576966.1 other upstream 25317 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 83370 745673 ~ 748475 (+) True G324206
TU384064 other upstream 221836 607612 ~ 610009 (+) False G324161
TU384003 other upstream 224931 606086 ~ 606914 (+) False G324123
TU384046 other upstream 273706 557415 ~ 558139 (+) True G324143
XR_004576993.1 other downstream 113563 957125 ~ 1010223 (+) False cpne4a
TU384187 other downstream 274706 1118268 ~ 1163614 (+) True G324258
TU385279 other downstream 1298944 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 1366660 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 1366660 2210222 ~ 2214261 (+) False LOC113533074

Expression Profile


XM_034297824.1 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 125.
End of interactive chart.

XM_034297824.1 Expression in each Bioproject

Bar chart with 3 bars.
XM_034297824.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.