RNA id: XM_034297842.1


Basic Information

Item Value
RNA id XM_034297842.1
length 1218
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC117595764
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19332174 ~ 19335280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACAGAGGAGTCAAAAGTAGTGCTCGGCTTCTGTGGTCATCAGTCTCAAAGGACAGAGAATACAAGAGATTTTTCTTCTGAGCGAAGGAACGACTTTTAAACATGAACAGAAAAGAGAAGCCTCAGCATAAAACTatgCAGGGAGCAATGGGAAGTAAACCGCAGCCACAGCCCAGaaaaagagaaggagcaGCGAAGACCAGCGCTCCAGGATTGAGTAGCAGGCCTAGACAGCAAGAACCTGGGCAGCAAACAGCAGGATGTAAACGTACACCTGAGAAAGTTCCGgCCTCTGGGAAATACAGCATGTACCATGCCGTGGTGGCAAACCCGAAAGGACGCTTGCCTCCTATTCACACAGCCAGAAATGGATCAATAGACGCTATGAAGTTCTTAGATGAACTCTTTCAAGGACCTAGTGCTGGACTTGCTGCAAAGAGCACTAGGAAACCAAAACTAAAGAAAGCATCTGAAAGCAAACCTCAGAAAAAGTTGCCTGACATCAGGGTACCTGAAAAACGCAAGTTTAAGAAGCCAGCCGGATTGGGAGCTGATTGGGAGAGATTGGATCAGGACTTGAGCTATTGGCTAAAACATAAGGTTGAGATAAGAGGTAAGACCACCAAGGAGGGAACTGTAAGGAAGAAGTACTCGGATCAACACGTGAGCAATGTAGAGGTAAGGGGATGTAAGACTGCTGAGGATAAAACTGAGGTAGAACCTCAaatcagcagcagctctgaggaTAAGATAAGAGCCAACATTACCAGTGCTGTCCTGGATTACGTAACCTCTGCATCGTTCAGGAGTCAGTTGGCACAGCGCGTTACGGAGGAGATCAATGTTAAAATAGCAAAAGCCGTGTCCCAGACTCATGCGCAACAACATGCCATGAAATTCAGTACGGCAACGAGTAAGGTACAGAACATCTCCCAGGATCTACAATCAACCAACAAATCCGTTAATCAGTCCAGAGTTCAGTCTAAGGCTCCAGCAAGAAGCTGTCAGGAAGAACGAACCAGCAAGCTCGGATTCAGTTACTGTATGGCATCTCTGATTGGCTTTACACTGATAGAATCTAGAGACCAAATGATGGAAAGATTTCAAAGCAAATCACCCATTCCTCCGACAGCAAGCAACAGTGCCACAGAAATAGTGGAAAATGTCTTTGAAAGCATCCTTGCTTCCCCAGAGTCCACTCCAGGAGCCAACAGGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396221 lncRNA upstream 398923 18933049 ~ 18933251 (+) True G334575
TU396219 lncRNA upstream 399464 18932502 ~ 18932710 (+) True G334573
TU396029 lncRNA upstream 478171 18761089 ~ 18854003 (+) True G334386
TU396027 lncRNA upstream 584697 18722416 ~ 18747477 (+) False LOC117595806
TU396406 lncRNA downstream 10609 19345889 ~ 19351752 (+) True G334733
XR_004576958.1 lncRNA downstream 186085 19521365 ~ 19522260 (+) True LOC117595782
TU396487 lncRNA downstream 225822 19561102 ~ 19589060 (+) True G334806
TU396561 lncRNA downstream 301588 19636868 ~ 19703804 (+) False cip2a
TU396588 lncRNA downstream 369405 19704685 ~ 19707006 (+) True G334888
XM_026938090.2 mRNA upstream 4049 19060889 ~ 19328125 (+) True ctnnd2a
XM_026938091.2 mRNA upstream 4049 19060889 ~ 19328125 (+) False ctnnd2a
XM_034298152.1 mRNA upstream 4049 19060889 ~ 19328125 (+) False ctnnd2a
XM_034298153.1 mRNA upstream 4049 19060889 ~ 19328125 (+) False ctnnd2a
XM_026938092.2 mRNA upstream 4049 19144343 ~ 19328125 (+) False ctnnd2a
XM_034298163.1 mRNA downstream 3886 19339166 ~ 19356597 (+) False dap
XM_026938102.2 mRNA downstream 3896 19339176 ~ 19360737 (+) True dap
XM_026938081.2 mRNA downstream 56693 19391973 ~ 19395890 (+) True ndufb4
XM_026938115.2 mRNA downstream 94488 19429768 ~ 19436760 (+) True arxa
XM_026938116.2 mRNA downstream 94488 19429768 ~ 19435547 (+) False arxa
TU396015 other upstream 614221 18693149 ~ 18717953 (+) True G334373
trnaa-agc_16 other upstream 952160 18379942 ~ 18380014 (+) True trnaa-agc_16
trnaa-agc_15 other upstream 952800 18379302 ~ 18379374 (+) True trnaa-agc_15
XR_004576959.1 other upstream 1008879 18315360 ~ 18323295 (+) False mtfr1
TU396386 other downstream 3926 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 3926 19339206 ~ 19427936 (+) False dap
TU396389 other downstream 3926 19339206 ~ 19360737 (+) False dap
TU396390 other downstream 3926 19339206 ~ 19360737 (+) False dap
TU396391 other downstream 3926 19339206 ~ 19427936 (+) False dap

Expression Profile