RNA id: XM_034297858.1


Basic Information

Item Value
RNA id XM_034297858.1
length 1801
RNA type mRNA
GC content 0.46
exon number 8
gene id hhla2b.1
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 19723836 ~ 19735685 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAGAAACCTGTCCATCTCGTCGCAACTGAATTCCCCATTCCTATCAACAAACAGCAGCTGCTCCCTTcagaagtcacacacacacacacacacAGCGTCAGCGATGCAAAGAACAGCAGCACACGTCTGGACTTGCGTGCTTTTCATGTGGTTTCTTAAAAAGACAGATGGAAAAACTCAAGATGTGCATATAACCTGTCAGTACTCTGAGGACTGCGTCCTTCCCTGCAGCTTTACCCCCTCAGGCGGGGAGGAGATCCGCTGGTTCAGACAGGACGTCCTCATTTACAGTCATCCACAGAGCACAAACTGGCACGACAGGCTTTTTATGGACAGGACGTCTATTTCAGCACGTGAGCTGTCGCTTGGAAATGCGTCACTCGTCCTACAGCGCTCTGTCCTGAGCGACAGGGGGCGCTACAGGTGTCAAGTGACGAAGGGTGAAAAAACAGACGAGTACTTTGTCATACTTAAAGTGGAAGCTCCTATCCGCTCAGTGAATCTGGAGATCACTCGTCTGAGTGGTTATGAGGAGGTCAAGTGCTCCACGTGCGATGTTTACCCCGCTCCTCACGTCTCCTGGTCCACCGATCCGCCCACGCCGATAGAGAAACTCAAATACACGACAAGAAAAATGGCTGACAAACAGGGGCTGTACATCATGGAGAGTAAACTGAAGAGGCTGGGACAGCGTAGTGACCTCACCTACATCTGTACCGTTAACTCGTCCTCTGCTGCTCAGACGTGGACCGCATCACTGACCGAGACAGTTCACAACAACGTCACAGTCACATCGAAGTTGTACTCGTTCTCCACCTGGACTGAAATAACCTCAGCTGAAGGTCAGGACATCACCATCCCCTGCAGAAGCCCCTGGAACCTGCAGAACTTTACACTGACCTGGTCCTTCACCAGAGCAAACACGTCCACTGTCATCTGCACTTACGACAGCAAGACGCAGCTGATCTCCAACCACTGGAACGGCACGGCGTGGCTCGAACCCCAGCGCATACAGGAAGGCGACGGATCCCTGCGACTGCGCGGCGTCCACAGCCTGGAACACATGGGAATGTACACCTGTAACATCTCAGCGCTCCAGAAGAGCCACGTTGGACAAACCAGGGTCGACATTACTTCATTACGTTCTgaaaATGAGAATCTGAGCATGAAAAGCTCCAGACCATGGTGGATTCCTCTAGTTGTTGTCATCGCTCTAATTCTCATCATTGCAGCCATTATAGTAGGAATAGTGAAATTACAAAATAAGTTCTCACAAACCAAACCCTCAGGAACAGCCAGATATTCCAAGGAGGtgaaagTTACTGTAAACAAGAGTGAAGAAATAACAGAAGGAAGTCATTTGACGTCTGATCAAAGCAAAGAGCACACGTGAGGAGGACTTCATCATCGTGTCTTCTGCATTTCCACAAAAACGTCAGAGAAAAGATGAACAGAGAGCAGAACCTGAGCTGCATGTGGACAATCTCTGCTGATTATAATCACAACGAtggatttttaactttaatttgaGATTATGAGGCTgattttttctctcattttgcACAGAAATCTGTGAGAAGTgatgctgcagtgtgttttggtcaCAGCAGAGTTTctaaagtaaaacaaataaataaataaaattaaaaaaacaaaaaacaaaaagcttttcAGAAATGTGCTGAGTGACATGAACATTACAGCAGTTACAGTGCTgccaaaaaaacactgaagtgacaaagcatttttataaacaataataaaagaaaaaatagagcaaaaacttttttatatataat

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU396860 lncRNA downstream 159374 19560978 ~ 19564462 (-) True G335150
TU396859 lncRNA downstream 172306 19551040 ~ 19551530 (-) True G335149
TU396813 lncRNA downstream 205527 19507088 ~ 19518309 (-) False pdk3a
TU396814 lncRNA downstream 295578 19391964 ~ 19428258 (-) True G335105
TU396959 lncRNA upstream 37168 19772853 ~ 19773057 (-) True G335230
TU396961 lncRNA upstream 52898 19788583 ~ 19789058 (-) True G335232
TU397159 lncRNA upstream 144207 19879892 ~ 19902336 (-) True G335404
TU397160 lncRNA upstream 153395 19889080 ~ 19892463 (-) False cnksr2a
TU397218 lncRNA upstream 324339 20060024 ~ 20061159 (-) True G335460
XM_034297803.1 mRNA downstream 7497 19711629 ~ 19716339 (-) False LOC113541040
XM_034297802.1 mRNA downstream 7497 19711629 ~ 19716339 (-) True LOC113541040
XM_034297806.1 mRNA downstream 12375 19704541 ~ 19711461 (-) False hhla2b.2
XM_034297804.1 mRNA downstream 13520 19704541 ~ 19710316 (-) False hhla2b.2
XM_034297807.1 mRNA downstream 13524 19704541 ~ 19710312 (-) True hhla2b.2
XM_034297843.1 mRNA upstream 14897 19750582 ~ 19795067 (-) True adgrg2a
XM_026937996.2 mRNA upstream 65889 19801574 ~ 19815297 (-) False ptchd1
XM_026937995.2 mRNA upstream 65889 19801574 ~ 19815296 (-) True ptchd1
XM_034297815.1 mRNA upstream 96325 19832010 ~ 19848495 (-) False phex
XM_034297814.1 mRNA upstream 96325 19832010 ~ 19848284 (-) True phex
TU396884 other downstream 120143 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 144916 19576108 ~ 19578920 (-) False nup58
TU395862 other downstream 1203631 18444658 ~ 18520205 (-) False mybl1
TU395863 other downstream 1280841 18442355 ~ 18442995 (-) False mybl1
trnay-gua_4 other downstream 1344102 18379649 ~ 18379734 (-) True trnay-gua_4
TU397303 other upstream 443727 20179412 ~ 20182412 (-) True G335523
TU397559 other upstream 506835 20242520 ~ 20246278 (-) False cops9
TU397560 other upstream 510881 20246566 ~ 20248461 (-) False otos
TU397621 other upstream 794937 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 874547 20610232 ~ 20612309 (-) True G335788

Expression Profile