RNA id: XM_034297862.1


Basic Information

Item Value
RNA id XM_034297862.1
length 4060
RNA type mRNA
GC content 0.53
exon number 29
gene id relch
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 16145056 ~ 16200451 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atggcggcGGGTAGCGTCAACCCGTTTAACGCGAGCGACTCGGAGGAGGAAACGGAGCGGCGGAGACGCGACGGCGGTGACAGCGAGCAGCGCAGCCCGAGTGATGAGGCTCAAGGCCGGAGCCCAGGGCCCTTCTCCCCTCCGCCGCCTGACGCGGATCCCGGCTCGCTCTTGCTGTCCAGCAGCCGGACAGGCGCGGCCCCTGGGGCGGGCAGCGGCGCGGAGCCCCCGCGGGTGTCTGTGGACGCGATCGCGGCGCAGCTGCTCCGGGATCAGTACATCCTCACGGCCTTGGAGCTGCACACTGAGCTGCTGGAGGCCGGCAGGGAGCTGCCCAGGCTCCGCGATTACTTCTCCAACCCGGGCAACTTCGAGCGGCAGAGCGCCACACCACCCGCCTGCAAAGAGCAGGGACTCGGGCTCGGTGCTGCAGGAGCTCTGAATCGGGCTGGCAGCATCAGCACACTGGACTCGTTGGATTTCACACGGTACTCAGACGACGGGAACAGGGAGTCGGACGAGAGGGTGGCGGTTCTGGAGTTTGAACTACGGAAAGCCAAGGAGACCATTCAGGCTCTGCGCAACAACCTGACTCAGGCTGCAGAGTGTGAAATCCCCTCCCAAGAGCGCAAAAACTACAAATCCAGTCCTGAAATTCAGGAACCCATCCGCCCCCTGGAGAAACGAGCCTTAAATTTTTTAGTGAACgagtatttattaaaaaatgaatacaagCTGTCATCCATCACCTTCtctgatgaaaatgatgatcaGgattttgAGTTGTGGGATGACGTGGGCTTGAACATTCCCAAACCTCCCGACCTGCTGCAGCTCTACAGAAACTGTGGCAGCAGCCAACATTCGCGACAGGAAACTGTAGATGTAGCTGTCGGCGTTGACGCTAGCGACCTGCCAGTGGACTACATTACCCAGGAGCCTGTGCAGAAGAACGAGACCATACAGCAGTCGGAGGTGGTGCAGGAGCTGGAGTACCAGATCAGCCTGCTGAACAGTGAGAAACAGAGTCTAGCTGAGCAAATAAAGAAATTACAGAGTGAGATCCAGGGTCTGCAGAGGAACATGGTGGTCCCTCCGGTAGCCCTGGTGGAGTGTGGGGAGTCAGAGTCACGGCTTCAGCGTGAGCAAGGTCTCCTGGATAACGGCCAGTATCTGGACATACGAGGAGTCACAGAGCTTGACGCTAATGCAGACTCCAAATCTAGCAGTAACACTACCACTAACACCAGCGCCACCACGATTACCACTACTGCCACTGCTGCTGAGAATTCCTCTTCATCTACACCCAACCACAGCAAGTTTAAAAGCCCTGACCAGCACAGCAAAGGCCCTGTACAGTTTGACCAACCAAACAGAAAGCTGTCTCCGGCCTTCCACCAAGCACTTTTGTCCTTCTGTCGAATGTCTGCTGACAGCAGGCTTGGCTCTGAGGTGTCACGTATCGCTGACAGTGAGGAGAGCGTGATGCTGATGCTGGGCCGCTGTCTGCCTCACATTGTCCCCAATGTCCTGCTTGCCAAGCGTGAGgAGCTCATTCCACTcatcctgtgcacagcctgcctCCACCCCGAGCCCAAAGAGAGAGACCAACTACTGCACATCCTCTTCAACCTCATCAAGAGACCTGACGAtgagcagagACAAATGATCCTTATGGGCTGTGTGGCTTTTGCACGGCATGTGGGCCCAACGCGGGTGGAGGTGGAACTTTTACCACAGTGCTGGGAACAGaTAAACCACAAGTACCCAGAGAGGAGGCTGCTGGTGGCGGAGTCTTGTGGAGCGCTGGCCCCGTATCTGCCGaaggAGATCCGCAGCTCTCTGGTGCTGTCCATGCTGCAGCAGATGTTGGCGGAGGACAAGGCCGATATGGTGCGAGAGGCTGTTGTCAAGAGTCTGGGTGTCATCATGGGGTATATTGACGACCCAGACAAATAcacccagGGCTTCGAGCTGATGCTGCTGTCTTTGGGTGATCTGTCAGAGAGAGTGATCAGTGCCACACATCAGGTGTTTATTCCTGCCTTCGCAGCGTGGAGTACAGAGCTCGGCAACCTGCAGTCTCATCTCATCCCCTCACTGCTCAACCGAATCGAGAAGCTGCTCCAgcagGGTGAACACAGTTTGGATGAACATAAGCTGCACATGTTCCTCTCGGCTCTGCAGTCTCTAATCCCTCCGCTGTTTGGCGTGGTGCTCCAGAACGCACCGTTCACCAGCCGAGCCACACTGCAGAGTGACATCACTCCCATCGAGGTGACCCGGTTCCCGCGCCCGGCGTCTCCTCTGCAGGACGTGGCGTTCATTGTGGGCAGCAGGGAGCAACTGGGTGCACTTCTGCAGCTGTATGAACATCAGCTCCAGCATGAGGGTACCACAGGGTGGGAGAGCCTGCTGTGGGTGGTCAATCAACTTCTTCCTCAGCTCATCGAGATCGTCGGCCGCATTAACGTGGCCTCCACCACCTGCGTGCATGAATTCTCCAGATTCTTCTGGCGGCTGTGCAGAACGTTCGGGAAAACATTTACTAACACCAAGGTGAAGCCTCAGTTCCAAGAAATCCTGCGGTTATCCGAGGAGAACGTGGATGCCTCAGCCGGTAATGGCATTTTGACCAAGGCGACGGTGCCCATCTATGCAACGGGGGTCCTGACATGCTACAACCAGgaggAAGACCGAAAGCTGTTGGTGGGCTTCCTGGAGGACGTTATGACtactctgtctctttcccatGCTCCGCTCGACAGTCTAAAAGCTTCCTTCGTAGAGCTCGGggcgAACCCGGCCTACCATGAGTTGCTGCTGACCGTGCTGTGGTACGGCGTGGTCCACACGTCTGCACTCGTTCGCTGCACTGCCGCACGCATGTTTGAGctgtTGGTGAAGGGGGTGAATGAAACCCTAGTAGCTCAGAGAGTTGTTCCGGCACTTATCACTCTCTCCAGTGATCCTGAAATCTCTGTGAGGATTTCCACTATCCCTGCATTTGGAACCATTATGGAGACTGTAACACAAAGAGAGTTGCTGGAAAGAGTGAAAATGCAGCTGGCTTCCTTTCTGGAAGACCCGCTGTATCAGGATCAGCATTCCTTACACATGGAGATTATTAAGACGTTTGGCAGGGTCGGCCCCAACGCCGAGCCTAGGTTCAGAGACGAGTTCGTCCTTCCGCATTTGCACAAGCTGGCTATGAGTAACAACATACAGACGGTGGAGAACAAGCGCATGGACATTGCAGCCCAGTTGTTTGAGGCCTACAGTGCTCTGTCCTGCTGCTTCATTTCTGAAGAGATCATGTTAAATCATTTTCTTCCTGGCCTGAGGTGCTTGAGAACCGACATGGAGCATCTTTCTCCAGAACATGAGGTTATTCTCAGCTCCATGATTAAGGAGTGTGAGCTGAAGGTGGAAAACCGAGCCATGGGAGAAGCACAAGGGTCCATGTCCATCGCAGCGAGTCTGGTGGGTGAAGACGCAAAGACCAAGTTCCTGAGTAAGATGGGTCAGCTGACCACGTCAGGTGCCATGCTGGCCAACGTTTTCCAGAGAAAGAAGTGAAGCAAGCGCTGCTGGGGAAGTTTCCCATGAGCCTCTGCTGTCTGGGACCTCCTACTTGAAGAAGTCAAACGTCTGCCTTCATTtcatccgttttttttttttttttttaaataggctccgttttatatcatatttatgtCTTAAATGTACTATATTCCAACCTCCAAAGAAaattgcactgttttttttttgtttgtttgtttttgacatATTATTTACGTCACTacgactttctttctttcgggttgtttttttgctttctttgttAAATCTATGATGGAGAAAAGATTCCTTCCCTGTCTTGCGCTCTTTCATGTGTTGCAGTGTCTCTGAAAGGTGTTttctataagtgtgtgtaatgaatttctttctccttttgGATATGCTCAAACCGTAAATAACTGTATAATACACTGAGAAGGAACATACCTGTATCCTGTATATTGGAAATTGGtgtcataattaaaaaaaaaaaagtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004576975.1 lncRNA downstream 73558 16060280 ~ 16071498 (-) True LOC117595797
TU394080 lncRNA downstream 103544 16041312 ~ 16041512 (-) True G332797
XR_003404166.2 lncRNA downstream 159948 15979116 ~ 15985108 (-) True LOC113541293
XR_003404161.2 lncRNA downstream 201867 15935828 ~ 15943189 (-) True LOC113541266
TU393962 lncRNA downstream 514612 15630223 ~ 15630444 (-) True G332682
TU394284 lncRNA upstream 111732 16312043 ~ 16312879 (-) False cpa6
TU394528 lncRNA upstream 420447 16620758 ~ 16622013 (-) True G333175
TU394562 lncRNA upstream 438853 16639164 ~ 16640767 (-) True G333197
TU394831 lncRNA upstream 536857 16737168 ~ 16760431 (-) True LOC117595808
XR_004576992.1 lncRNA upstream 549237 16749548 ~ 16760423 (-) False LOC117595808
XM_026938238.2 mRNA downstream 4100 16125117 ~ 16140956 (-) True tnfrsf11a
XM_026938239.2 mRNA downstream 4100 16125811 ~ 16140956 (-) False tnfrsf11a
XM_026938237.2 mRNA downstream 29143 16096981 ~ 16115913 (-) True LOC113541324
XM_026938187.2 mRNA downstream 245458 15777021 ~ 15899598 (-) True LOC113541299
XM_026937817.2 mRNA downstream 526214 15615498 ~ 15618842 (-) True sec61g
XM_026938228.2 mRNA upstream 19778 16220089 ~ 16274511 (-) True arfgef1
XM_026938229.2 mRNA upstream 19778 16220089 ~ 16274510 (-) False arfgef1
XM_034297874.1 mRNA upstream 80960 16281271 ~ 16312916 (-) False cpa6
XM_026938123.2 mRNA upstream 80960 16281271 ~ 16312915 (-) True cpa6
XM_034298006.1 mRNA upstream 487411 16687722 ~ 16699950 (-) True csrnp1b
TU393587 other downstream 1079246 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 1207652 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 3467123 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 3467123 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 5061905 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 630385 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 630385 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 915787 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 985213 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 1707583 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile