RNA id: XM_034297872.1


Basic Information

Item Value
RNA id XM_034297872.1
length 2149
RNA type mRNA
GC content 0.52
exon number 10
gene id lrrc31
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20281611 ~ 20293054 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGTGACACGCGCGTGACGCTCAGTAACCGGATATCCGGTTCACAGCAGGTTCAGAGATTAGATCAATGAAAGATAAGTGCTGATGTTTGACTTGTTTTGCGATAAAAGTTTAACTGCATGTCGCGCAGAAAGTCTTATTTTACCagtaaattgtataaaatgtgtttttgtttctgattgAGAGATTTTTAGTCTTTATTTGTTCACAGGTTCAGCGCGCGCGCGTAACATGGCCTCAGCAGAGCAGCTGAAAGGGCGCGAGGCGACTCAGAAAAGATCTCCACTGGACCTGATCATGAACCAGTTCCGGAGGAGAACCTCCTTCACCGAGAGGAAGAAGCCGTCCATGGGCCGTCTGTTCCGGCCGTCCGAGAGCAACGACAAGAAGAGCGAAGGGATTCCTGAGGCGAAGGAGCCGGAGATCAGTGAGGAGAAGGACAGCGTGAGACTCGCAGCAGAGAGCAGCGACGACTCGGAGATCTCCTCTGTGGTGGGATGGGGTCGCGTCAAGCAGTTCGTCCAGAAGCTTGGCAAAACTCCAGACAGCCAGAGTCTGAGTCTGAGCCACTGCGACCTCACAGCCACGGACGCCGTGGAGCTCGGAACCTTGCTGCCGTTCCTGACCCAGCTGGAGGTGATGGATCTCTCCTGGAACGATCTGCTCGGAGGTTCTCTGAAAGCTCTGAGCGTCCACATGCAGCACGTCAGCAAGCTGAAGGTCCTGAAACTGAGCGGCTGCAGACTCACGGCTCAAGACCTCGGAGCTCTGGGAGAGACTCTGCATTATGTTCCCTTGTTGGAGATGTTGGATTTGTCCTGGAATGCTGGGATTGGAGGAGGAAATCTTCATCTTCTAACCGAACATCTCCACTCCACCAGCTCTCTGAGGGAGCTTCATCTGCTCGACTGCCAGCTCTCAGAGACGGACAGCGTGGCACTGGCTGAGGCGCTTTTACTGTTGCCGTGTCTGGAGCTTTTGGATTTGTCCAATAACAAGCTGCTGTGGAGAGCGTTGGAGAACATCAGCTCCTCTCTGAGCTCCACTCCACAGCTGAAGACTCTGAAGATGAGCAAGTGTGGACTGAATCAGGAAAGTCTCGCTATCCTGGgagagaaaatgaaattcCTCGTGGGTTTGGAGCATCTGGACGTGTCGTGTAATAAAGAGTGCGGAGGCGGTTTCGGCGCCATGGCGTCCAGTTTGTCTTTCCTCACACACCTGAAATGTTTGGACCTGCACATGTGCTGTCTGACGGAGGAAGACGCTCAGACGCTGGTCCAGGTTGTTCCTGCTCTGAGCGAACTCTCTGAACTTGATCTGTCTTGTAACAAAAGTATTGGCGCCGCGGTCCAGTCTCTGTTCCCCGTCCTTCCCCGGTCCAAGATGAAGAGGCTTCACCTGAGTAACTGCAGTCTGAGTCCTGAAGCCTGTCACGCTTTAGctgCCGTCATGCCGTCACTCTCACAGCTGCAGAGTCTCAGTTTGTCGTGGAATAAAAGTGTTGGTGAAAATCTGCAGCAGTTTGTGGAGCGTCTCCATGTGGAGTGTAAACTGGAGGAACTGAAGCTGAGCAGCTGTGACCTGAACACCGACGACCTGCTGCACTTACAATCGGCGTGTAAACGCGGTGCGCTGTCGAATCTGAAGCTTTTGGACGTGTCGTATAACGGGCGCGTGGGAGACGCCGGCTGGGTCTCGCTCTTCAGAGAAGCAGGAGGACTGAAGCAGCTGCAGGAGCTGGACGTCAGCCTGCGTCCTGACGCCTGTCTGTCTGCGTCTGCGTGGACGGCAGCGATGACGGACGCTCTTCCTCAGCTGTCGTCGCTCCGGCGTGTGTCTATGCAGCGCTGGACTCTCGGCtcggaggagagacagaaactgGAGAAGAGCCTGAAGAAGAGGAACGTCGTGCTGGAGAGTGATGAAGTGAGCGTGCAGAACGTCGCAGGTTAACCTGTTTACTCTCACACTCTCGCATTATCACGGCTTAACGTGAATCTACGCTACAGTAAATTAACGCATTTGTTCTAAAACgttaatgtttctatagtaacaaacataatctaagtctaataattaattcatttattaaaaatatgatatggtgatttttctgtaaggagatgtttatgtaacgtttatggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397267 lncRNA downstream 87230 20121516 ~ 20194381 (-) False G335498
TU397272 lncRNA downstream 89825 20138175 ~ 20191786 (-) False G335498
TU397270 lncRNA downstream 89825 20159122 ~ 20191786 (-) True G335498
XR_003404154.2 lncRNA downstream 108687 20167317 ~ 20172924 (-) True LOC113541188
TU397218 lncRNA downstream 220452 20060024 ~ 20061159 (-) True G335460
TU397629 lncRNA upstream 267119 20560173 ~ 20564445 (-) False stag1b
TU397652 lncRNA upstream 367574 20660628 ~ 20661829 (-) True G335800
TU397687 lncRNA upstream 451505 20744559 ~ 20745016 (-) True G335831
TU397718 lncRNA upstream 629853 20922907 ~ 21002111 (-) True G335859
TU397730 lncRNA upstream 723892 21016946 ~ 21018572 (-) True G335868
XM_034298193.1 mRNA downstream 29610 20249457 ~ 20252001 (-) True apodb
XM_026938017.2 mRNA downstream 33151 20246451 ~ 20248460 (-) True otos
XM_026938022.2 mRNA downstream 35300 20242488 ~ 20246311 (-) True cops9
XM_026938000.2 mRNA downstream 41231 20234786 ~ 20240380 (-) True and1
XM_034298100.1 mRNA downstream 235825 20026736 ~ 20045786 (-) False klhl24b
XM_034298170.1 mRNA upstream 2889 20295943 ~ 20309042 (-) True skilb
XM_026938273.2 mRNA upstream 47835 20340889 ~ 20356019 (-) True slc7a14b
XM_026938189.2 mRNA upstream 68539 20361593 ~ 20363736 (-) True LOC113541302
XM_026938094.2 mRNA upstream 71402 20364456 ~ 20366641 (-) True rpl22l1
XM_034298113.1 mRNA upstream 76097 20369151 ~ 20375049 (-) True eif5a
TU397560 other downstream 33150 20246566 ~ 20248461 (-) False otos
TU397559 other downstream 35333 20242520 ~ 20246278 (-) False cops9
TU397303 other downstream 99199 20179412 ~ 20182412 (-) True G335523
TU396884 other downstream 677918 19600727 ~ 19603693 (-) True G335165
TU396861 other downstream 702691 19576108 ~ 19578920 (-) False nup58
TU397621 other upstream 237568 20530622 ~ 20557948 (-) False fndc3bb
TU397639 other upstream 317178 20610232 ~ 20612309 (-) True G335788

Expression Profile