RNA id: XM_034297886.1


Basic Information

Item Value
RNA id XM_034297886.1
length 2075
RNA type mRNA
GC content 0.50
exon number 12
gene id zgc:114181
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 222517 ~ 231494 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGATTATTGTCCCGAGCCCACGCTGTGATGGCGAGTATTTAACACCGAGCTGTTCAGgactcgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgttgtgagctCCGAGCTGCCACTGCTGAACATGatggagtgtgtgtctgtgtgtgttgtggtgttgaTGATGTCAGCAGCGAGAGGTCACTCGTTGAGATTTAACGATCTGACGGACTACGTGAATAAACATCAGGAGGAGTATGTACAGgctCTGAGAGACTGGGTGTCTATAGAGAGTGACTCCAGTGATGTCACTAAGAGGGCGGAGCTACAGCGTATGATGGGCGTGGTGGAGGAGAAGCTGCGCGAGATGAAGGGAAACGTGGATGTGATGGACGTCGGCACTCAgacgCTGGAGGACGGCAGCATCATTCCGTTACCTAAAGTGGTGACGGCGGCGTTCGGCGAGGATGAGAATAAACACACGGTGTGTGTGTACGGACACGTGGACGTCCAGCCGGCCAGGAGAGAGGACGGCTGGGCCACAGACCCCTACAACCTGACGGAGATTAACGGAAACCTGTACGGCAGAGGAGCCTCGGATAATAAAGCTCCGGTTCTGGCCTGGATTCATGCAGTGGAGGCGTATAAAGCTCTGGACATGGAGCTGCCGGTGAACGTGAAGTTCCTGATTGAGGGGATGGAGGAGACGGGTTCTAACGGTCTGGACGTCCTGGTGGCGGCTCAGAGAGACGCGTTTTTCTCTGATGTGGATTATATCGTTATCTCTGACTGCGGCTGGCAGAGCGCTCGTCCTGCTCTCACCTACGGCACGCGGGGAAACGCCTACTTCTACGCTCAGGTGGAGGGACCGAAGCAGGATTTACACTCCGGAGTGGACGGAGGAGCCGTGATCGAACCCATGACCGACCTGATCGCAATTCTAGACACGCTGATCAGTGCGAGCGGTGAGATCCTGATCCCCGGCGTTACAGACGCAGTCGCGAACTTCAccgaggaggagaggaagataTACGAGGAGGTCGATTTCGACATGGAGACTTACAGGAGAACGATCGGTGTTGAGCGACTCATGTACGACAATAAGGTCGACCTTCTGGCTCATCTGTGGCGTTTCCCCACCGTGTCCATCCACGGCATCGAGGGAGCTTTCTCCGGCCACGGAACAAAAACCGTCATCCCCGCTAAAGTCACGGCCAAGTTCTCCATCCGCCAGGTTCCCAACATGGAGCCTGCAGTCGTGGAGAAACAGgtaACTGATCACCTGCACGCTGTGTTTGAGCAGAGGAAGAGTCCCAATAAGCTCAAGGTGAAGATGGTTATCGGAGCGAAGCCGTGGTTAGCCGACATCAAACATGCGCTGTACGAGGCTGGGAAGAGAGCAGTGAAGAGAGTGTTTGGAGTGGAGCCGGAGCTGATCCGAGAGGGAGGGACAATTCCCATCGCTCGCACTTTCCAGGACGTGACGGAGAAAGACATCATCATGCTGCCCATCGGAGGCTTCGACGACGGCCTGCACTCTCAGAACGAGAAAATCAGCAGgTATAACTACATCGAGGGAACGAAGCTGTTCATCGCTTACCTGCACGAGGTTTCTCACATTAAGAAGGACTGATCACGTCTACACGCTGTCCTGTGATGAGTTCCTCAATCAATCACACAATCAGTGTTACTGATGCTATCACTTTCTGTCTGTGCATTTCATTTCctaatgctctctctctctctctctctctctctctctctccctgtgcgTCATGACAATATTCAGAGCTGAAATAAAGTACATTATTAGCCTACAGAGCAGAAAACACGTGCTGGAGAGTCTTTGCAAGCATTATGTTTTACAGATATATCAATAAAATCACAGTTTCAGATTATATTAGAATAACAACTGACCtttattttaagtttaatttttttattgttcttacTGTGTGTATTCCTTTCCAGAAATATGACAAATGAACAATTTAAAACCGTGAGACTTTTAttgtgtagttttcagaacagaCGTGTGATTTGAAGGTTGCCAGGTTGCATCATTAAAAACAAGACTTCATCTTATATAAGAA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
K05604 CNDP1; beta-Ala-His dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU383904 lncRNA upstream 3418 218832 ~ 219099 (+) True G324060
TU383892 lncRNA upstream 28672 182506 ~ 193845 (+) False cmc1
TU383893 lncRNA upstream 32085 182506 ~ 190432 (+) True cmc1
TU383880 lncRNA upstream 71527 116967 ~ 150990 (+) True G324039
TU383888 lncRNA upstream 83656 137101 ~ 138861 (+) True G324045
XR_003402450.2 lncRNA downstream 2120 233614 ~ 234579 (+) False LOC113523709
TU383905 lncRNA downstream 2165 233659 ~ 234831 (+) True LOC113523709
TU383912 lncRNA downstream 8876 240370 ~ 327939 (+) False tbx20
TU383927 lncRNA downstream 70379 301873 ~ 303209 (+) False tbx20
TU383910 lncRNA downstream 95037 326531 ~ 355303 (+) True G324064
XM_026909662.2 mRNA upstream 28891 182467 ~ 193626 (+) False cmc1
XM_026912119.2 mRNA upstream 107371 108218 ~ 115146 (+) True ethe1
XM_026912112.2 mRNA upstream 114719 98037 ~ 107798 (+) False LOC113525556
XM_026912116.2 mRNA upstream 114719 98037 ~ 107798 (+) False LOC113525556
XM_026912114.2 mRNA upstream 114720 96799 ~ 107797 (+) True LOC113525556
XM_034298133.1 mRNA downstream 70386 301880 ~ 321183 (+) True tbx20
XM_034298255.1 mRNA downstream 102190 333684 ~ 350549 (+) True dpy19l1l
XM_034297869.1 mRNA downstream 224022 455516 ~ 456979 (+) True LOC117595771
XM_034297870.1 mRNA downstream 224082 455576 ~ 456979 (+) False LOC117595771
XM_034297821.1 mRNA downstream 228719 460213 ~ 466623 (+) True LOC113524801
XR_003402678.2 other upstream 188728 25296 ~ 33789 (+) False nod1
TU383850 other upstream 199307 22297 ~ 23210 (+) True G324020
TU383916 other downstream 9703 241197 ~ 292588 (+) True G324068
TU383926 other downstream 74687 306181 ~ 311233 (+) False tbx20
TU383913 other downstream 83856 315350 ~ 321774 (+) False tbx20
TU383914 other downstream 123287 354781 ~ 412109 (+) True G324067
TU383942 other downstream 206897 438391 ~ 442287 (+) True G324085

Expression Profile