RNA id: XM_034297894.1


Basic Information

Item Value
RNA id XM_034297894.1
length 2300
RNA type mRNA
GC content 0.49
exon number 8
gene id slc25a32b
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2646781 ~ 2656914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGGTTAGCAGCATTTTTACACGGTGTTAGCATGAGCTCGAGCTCCGGACAGGGACAGGGAGCCGCCGCGGGGCTCGCGGTCACCGCAGAGTCTCCGGTTGGAGGCGTCTCTGTGACGGGGAACATCCGGAGACTCTACAGCCACGTGCGGCTTGAAAACCTGGCCGCTGGGCTGAGTGGAGGTGTGGTGTCCACCATGGTGCTGCACCCGCTGGACCTGGTTAAAGTCAGGTTCGCAGTGAGCGACGGCTTGGAGCTGAGGCCGAAGTACCACGGCATTTGGCACTGCATGAGGAGCATCTGGCAGCAGGAAGGACTTCGCGGCTTGTACCAGGGGGTCACCCCGAACGTCTGGGGCGCCGGGGCATCATGGGgtctttatttcttcttttatAATGCCATCAAGGCGTATGTCAAGGAGGGCCGTCAGACGGAGCTGAGTGCCACGGAGCACCTGGTGTCTGCAGCAGAAGCAGGAGCGATGACTCTCTGCCTCACAAACCCGATCTGGGTGACAAAGACACGCCTGGTTCTGCAGTACAGCTCAGATCCAAGCCAGAAGCTGTACAGGGGCATGGTGGACGCGCTGGTGAAGATCTACCGTCAGGAAGGAGTAGCGGGACTCTATCGGGGGTTTGTTCCCGGCCTGTTCGGGACGTCTCATGGAGCTCTGCAGTTCATGGCATACGAGGAGCTGAAGAGAGACTAcaacaaatacagaaacatgCATTCAGACGCTAAACTGAATCCATTAGAGTACATTACAATGGCGGCTTTGTCCAAAGTCTTCGCCGTGGCCACCACATACCCGTACCAGGTGATCCGAGCTCGCTTGCAGGATCAGCACGCGAGCTACAACGGGGTGGTGGACGTCATCCGGCGGACGTGGAGGAACGAGGGAACTTTGGGCTTCTACAAAGGCATGGTGCCCAACCTGCTCCGGGTGACGCCGGCCTGCTGCATCACCTTCGTGGTGTACGAGACGGTGTCCAGCTTCCTCCTGGACCAGCACAAATGAGACCAAGCTGAGGGGGCGATCGCAGAAAGTTAGCGCCGAGAGAGATGCTAGTTTAGCACGGAGCGTGAGCTCTCGCTGGGCCACATCGCAGACCAGACCACCAGACGAGAGGTGGAACGAGGGTTCTCATGACGCAGACATGATGTGGCTCTTGTATAAAGCTAAACTGTGAACTGGTGCCGCTTTGAGTTTACATGTTCAGGATACTTTGGAAAgactgtgtttgtatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagacaaGACACCAAACAGAACTGAAGCAATGGATAGATGCATTCAAATAAACCCAAAGGGATGGTTTAGCaagaaaaatcaaatgtaaacaATTTTCCTTTTACCTCAGAGTGTATGGGTCTTGAAATTTACTTccttagttttgcactggagctaggGAGTGAGTGGGGGTCGTGGGAGCGGGCGTGGCGTTTGTGGGCGTGGGGGTTGTGGGAGCGGGCGTGGCTGTCATGTAAGAACTAAGGGGGCAGCTAGTGCTGTCTGTGTAATCCCGCCCCCTTGGCCCCGCCTCTCAGAGGCCGAATGTGGAAATTTAGGGGAAAAGCTGGacgtgatttgtgtgtgtggcggTCTGGAAAACCCACTGGATGTCACTGCGTTAAATTTTGGCAAAAACCAAAAATGTTAGGTCTCTGATATACTTTAACACCTcaagaaatcataaatatatttcgtcaaaatatttatttattttctaaccttgccttggcgTCATTCTGCAAAGATTACAATGGGTAAGCAGCCATGTAGTTCCACTTTGGACTCACATATGAATgcagatagaaaaaaaagtgacattacGGAGCTTAACAATGCCATTTGAAGCATATATAAAGGTTTGGCCAGATAGTTTCATATACGATGTTGAGTTGCCTATATTAGCATCATAGCTCCAGggcaaaaataaagaacactGGGACACCTAAGAATATCTTCGGCTGCTTTTAAGGTAGCTAgaaaattttttacatttgattttagCGATAAACTGTTTCTTCCCTGCTTTAGTTCAATAAAAAAACTGGACatcatttgtcattttcaggTGTAGACCAGTAAAGGAATAATACGACGTAAGGATTGGAGAGAAAGATACGCAGTGGTGTGAACTGCGTCTACtttatgttcattatttattgaaagtcttataaaaaaaaatctggattcTCAACATCTTTATTACCATCAGTTATTGagatgctaataataataataataaatcagagaGGTACGTA

Function

GO:

id name namespace
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15115 SLC25A32, MFT; solute carrier family 25 (mitochondrial folate transporter), member 32

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385672 lncRNA upstream 77042 2567979 ~ 2569739 (+) True G325435
TU385486 lncRNA upstream 246097 2400470 ~ 2400684 (+) True G325271
TU385483 lncRNA upstream 249894 2396673 ~ 2396887 (+) True G325268
TU385460 lncRNA upstream 311675 2334879 ~ 2335106 (+) True G325247
TU385253 lncRNA upstream 626393 2020184 ~ 2020388 (+) True G325089
TU385973 lncRNA downstream 414935 3071849 ~ 3072073 (+) True G325697
TU386009 lncRNA downstream 482398 3139312 ~ 3208962 (+) True G325730
TU386041 lncRNA downstream 602015 3258929 ~ 3260181 (+) True G325754
TU386119 lncRNA downstream 663003 3319917 ~ 3322330 (+) True G325815
TU386344 lncRNA downstream 1044420 3701334 ~ 3702153 (+) True G326023
XM_026924423.2 mRNA upstream 39745 2583219 ~ 2607036 (+) True col28a1b
XM_026924042.2 mRNA upstream 83700 2554120 ~ 2563081 (+) True ica1
XM_026924043.2 mRNA upstream 83700 2554120 ~ 2563081 (+) False ica1
XM_034297929.1 mRNA upstream 83700 2554147 ~ 2563081 (+) False ica1
XM_034297832.1 mRNA upstream 96884 2542942 ~ 2549897 (+) True LOC113532859
XM_026924446.2 mRNA downstream 583528 3240442 ~ 3251360 (+) False pbx2
XM_026924447.2 mRNA downstream 583528 3240442 ~ 3251360 (+) False pbx2
XM_026924444.2 mRNA downstream 583530 3240444 ~ 3251360 (+) True pbx2
XM_034298007.1 mRNA downstream 583530 3240444 ~ 3251360 (+) False pbx2
XM_026924445.2 mRNA downstream 583531 3240445 ~ 3251360 (+) False pbx2
TU385671 other upstream 77042 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 432482 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 432520 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 502270 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 1483167 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 1354496 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 2264066 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 2267872 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 2675354 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 5244878 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile