RNA id: XM_034297895.1


Basic Information

Item Value
RNA id XM_034297895.1
length 1516
RNA type mRNA
GC content 0.50
exon number 7
gene id slc25a32b
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 2646781 ~ 2656914 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCACATAGATACGAAGTGCACTAAGTAGAGTGCAGAAGCCTTTTACAAAAGAGCTCACATATAATTATAACGGACGGATTTGGAATTGTTTttgttgcatttgttttttcacGTTGTACGTTACTAAATAAACTTCATCATTAATGGCTATATTATATTGATTAAGCGTGAAACCCTTTATGTGTAGGGCACCTAAAGAGGCCACAGTGAGCGGTTTGGGATGCGGCCTTGCTAACTGACAGCATCGTGCTCGTGCACGTCCAGCACTAACAGGAAGGTCACTATGTTTCCAAACGTGGATTTTTAAAgcaggacaaaaaaacaaacacccaAACAAACAGGATAACTAGGAGTCAAATTAAAGTTAAGGTCAAAAGTCGAGGTTTATTTTTAACTAGAGCGcaagcttgctagctagcaggCTATAGCTGTGAAGTGTGTATGTAACTGCGTGTGTCGTGCCGCAGGTGTTAGCATGAGCTCGAGCTCCGGACAGGGACAGGGAGCCGCCGCGGGGCTCGCGGTCACCGCAGAGTCTCCGGTTGGAGGCGTCTCTGTGACGGGGAACATCCGGAGACTCTACAGCCACGTGCGGCTTGAAAACCTGGCCGCTGGGCTGAGTGGAGGTGTGGTGTCCACCATGGTGCTGCACCCGCTGGACCTGGTTAAAGTCAGGTTCGCAGTGAGCGACGGCTTGGAGCTGAGGCCGAAGTACCACGGCATTTGGCACTGCATGAGGAGCATCTGGCAGCAGGAAGGACTTCGCGGCTTGTACCAGGGGGTCACCCCGAACGTCTGGGGCGCCGGGGCATCATGGGgtctttatttcttcttttatAATGCCATCAAGGCGTATGTCAAGGAGGGCCGTCAGACGGAGCTGAGTGCCACGGAGCACCTGGTGTCTGCAGCAGAAGCAGGAGCGATGACTCTCTGCCTCACAAACCCGATCTGGGTGACAAAGACACGCCTGGTTCTGCAGTACAGCTCAGATCCAAGCCAGAAGCTGTACAGGGGCATGGTGGACGCGCTGGTGAAGATCTACCGTCAGGAAGGAGTAGCGGGACTCTATCGGGGGTTTGTTCCCGGCCTGTTCGGGACGTCTCATGGAGCTCTGCAGTTCATGGCATACGAGGAGCTGAAGAGAGACTAcaacaaatacagaaacatgCATTCAGACGCTAAACTGAATCCATTAGAGTACATTACAATGGCGGCTTTGTCCAAAGTCTTCGCCGTGGCCACCACATACCCGTACCAGGTGATCCGAGCTCGCTTGCAGGATCAGCACGCGAGCTACAACGGGGTGGTGGACGTCATCCGGCGGACGTGGAGGTCTGGGAGATTTGACAATATGATATCAATATCACGATATATTAACATCATGATGCATTTTTCAGAGCATCACTGATATCGTCATGTGTCAGTGCTAGAAGTGTATTATATACTCACAGCTTATATTTATCGTTTTTTATCTTTTCCTCATGAAATACAAATTTTTATctgaataaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU385717 lncRNA upstream 902 2644041 ~ 2647583 (+) True G325462
TU385672 lncRNA upstream 78746 2567979 ~ 2569739 (+) True G325435
TU385486 lncRNA upstream 247801 2400470 ~ 2400684 (+) True G325271
TU385483 lncRNA upstream 251598 2396673 ~ 2396887 (+) True G325268
TU385460 lncRNA upstream 313379 2334879 ~ 2335106 (+) True G325247
TU385973 lncRNA downstream 417473 3071849 ~ 3072073 (+) True G325697
TU386009 lncRNA downstream 484936 3139312 ~ 3208962 (+) True G325730
TU386041 lncRNA downstream 604553 3258929 ~ 3260181 (+) True G325754
TU386119 lncRNA downstream 665541 3319917 ~ 3322330 (+) True G325815
TU386344 lncRNA downstream 1046958 3701334 ~ 3702153 (+) True G326023
XM_026924423.2 mRNA upstream 41449 2583219 ~ 2607036 (+) True col28a1b
XM_026924042.2 mRNA upstream 85404 2554120 ~ 2563081 (+) True ica1
XM_026924043.2 mRNA upstream 85404 2554120 ~ 2563081 (+) False ica1
XM_034297929.1 mRNA upstream 85404 2554147 ~ 2563081 (+) False ica1
XM_034297832.1 mRNA upstream 98588 2542942 ~ 2549897 (+) True LOC113532859
XM_026924446.2 mRNA downstream 586066 3240442 ~ 3251360 (+) False pbx2
XM_026924447.2 mRNA downstream 586066 3240442 ~ 3251360 (+) False pbx2
XM_026924444.2 mRNA downstream 586068 3240444 ~ 3251360 (+) True pbx2
XM_034298007.1 mRNA downstream 586068 3240444 ~ 3251360 (+) False pbx2
XM_026924445.2 mRNA downstream 586069 3240445 ~ 3251360 (+) False pbx2
TU385671 other upstream 78746 2565700 ~ 2569739 (+) False G325435
XR_003403389.2 other upstream 434186 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other upstream 434224 2210222 ~ 2214261 (+) False LOC113533074
TU385279 other upstream 503974 2142506 ~ 2144511 (+) False bola1
TU384187 other upstream 1484871 1118268 ~ 1163614 (+) True G324258
TU386582 other downstream 1357034 4011410 ~ 4013538 (+) False hamp
TU386810 other downstream 2266604 4920980 ~ 4923681 (+) True fabp10a
TU386814 other downstream 2270410 4924786 ~ 4930154 (+) True srsf10a
TU387482 other downstream 2677892 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 5247416 7901792 ~ 7902608 (+) False LOC113532663

Expression Profile