RNA id: XM_034297896.1


Basic Information

Item Value
RNA id XM_034297896.1
length 1655
RNA type mRNA
GC content 0.38
exon number 5
gene id ccdc58
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17305155 ~ 17309921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATATTCTTTCACCAATATAATGCAGGCATTGTTTGGGCAGCTATGACCCTCACAGGTTTTGAGGACCCTTCAGTCCACCATGGCGGCGCCCGGTGGCACTCTGAATTGTGAGGACTTTTTAATGTTTCAGGAGGTGTTAAAAGCAATGCGGACCTTTGATGACAGGATTGTCCACGCTCTCAACACCACCGTGCCCACGGTGTCCTTCTCAGGAAAAGTGGATGCCACGCAGACCTGCAAAGAGCTCTACGAGTCTCTGATGGAGGCCCATATGAGTAGAGATAAAGCAATAAAGACATGTATTATAGAAACGTCAGAAGTTGTCGGGCGGTTACGTGAAGCGAGGGCGAAGGACAGCGACAACCTGTCAATCATCAAACAACTCAGGAAAGAACAAAACAAGTTAAAACTCATGCAGTCTGAACTGAACGTTGAAGAAGTCATCAATGATCGCAGTTTGAAGGTTTTCAATGAACGATGTCGAATCCACTACATCCCCCCTAAGATCAATTAAACCTCAGTGTCCTTTGGAGAGCTCTACAGTAAACACTGAGACGGCTGTGAATCACAACTGGAGTGACtttggatgctgctctggcagACCGCTATAAATCCCTCTCATTCTCACTGTTAGTCTGAACTCCtgtgtttctacagtaacatgAGACTTCTGCTCTTCATACAGCTGTTGTACAAAAAggatttttataaacatttttttttttccagtggcCAGCGTGTGTTCAGTTCTACTCTCTCTTTACAATTTACATTGCAACCTGAATTACAGGTGAGACGAAGTGAAACTGTGTGGATGTGGAGTTGGGTGgaaattaaatggaaaaaaaacacaaagacgGTACGTTTGATTGGGATCTTAAAGGAATAAAGTCGAAGTCGGACGCCGGCATGATAAGTAAAGGTATTGCAATCCTGGTCATGTTCTCTACAGATAGACCAGCTACAGTTAATCCCAGGCTTAAAGAACAGCACAATTTCTTATataacaagtaaggaataaaacactttcgggcatgctgttatagcaaaataatcaatgatgatgTGGTATGAAGTagcgttactgttaccatcctgaagttgtgACAGCAAACAATACAATTTACTCAAATAACACCTACATTGAAAACAGTGCTTTTCATtccacttttattatttaccttggcatttccaaaactagacaaaaaaaagaataaacagtTGGCATATTCCAACCTCCTTATTCCCAGTGAACTCCACCTTATCTGTGTTAAAAAGACAATGGAAACACATCAGTAGTTAAACATTATGGCAATTCATAAATACTTAGTtatgaataatgaaataaatattaatgaatatgaatattaagTTATTTATAAATGACTGATATTTATCATGGTTAGTTTGTTAGTCAGAAGAAGCCCGTTTCTTGTCAGTTCCATAACTAACACAGAATAAATGTGATCAATgacactaaataaatatataaattacatataGAATATAAATCCAAACTCAATCCCAAAtccctgtgtgtatgtgttatcaTAGCCATGAAAATTTTAAaccaaagaaaggaaatgttcaacATTCAGGATTCTACACTATTTCTCAGTTGCTATTTAAATTAAAGCagatgtgtgatattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU394991 lncRNA downstream 3159 17287256 ~ 17301996 (-) False G333525
TU394986 lncRNA downstream 3159 17290137 ~ 17301996 (-) False G333525
TU394977 lncRNA downstream 5454 17285753 ~ 17299701 (-) True G333525
TU394994 lncRNA downstream 6709 17293375 ~ 17298446 (-) True G333527
TU394988 lncRNA downstream 10121 17287256 ~ 17295034 (-) False G333525
TU395143 lncRNA upstream 68375 17378296 ~ 17378572 (-) True G333649
TU395144 lncRNA upstream 70934 17380855 ~ 17381236 (-) True G333650
TU395146 lncRNA upstream 73821 17383742 ~ 17384023 (-) True G333652
TU395147 lncRNA upstream 75358 17385279 ~ 17385646 (-) True G333653
TU395150 lncRNA upstream 79533 17389454 ~ 17389741 (-) True G333656
XM_026938267.2 mRNA downstream 23532 17277404 ~ 17281623 (-) True si:ch211-161h7.5
XM_026938256.2 mRNA downstream 29027 17266256 ~ 17276128 (-) True si:ch211-161h7.4
XM_034298305.1 mRNA downstream 66039 17191319 ~ 17239116 (-) False vipr1b
XM_026938244.2 mRNA downstream 66049 17191319 ~ 17239106 (-) True vipr1b
XM_026938200.2 mRNA downstream 143948 17142461 ~ 17161207 (-) True nktr
XM_026938088.2 mRNA upstream 6599 17316520 ~ 17329657 (-) True kpna1
XM_034298202.1 mRNA upstream 54720 17364641 ~ 17378007 (-) False qtrt2
XM_026938253.2 mRNA upstream 54720 17364641 ~ 17378007 (-) False qtrt2
XM_026938252.2 mRNA upstream 54720 17364641 ~ 17377985 (-) True qtrt2
XM_026938211.2 mRNA upstream 80734 17390655 ~ 17397944 (-) False zdhhc23b
XR_004576994.1 other downstream 66049 17185524 ~ 17239106 (-) False vipr1b
XR_003404146.2 other downstream 165470 17116098 ~ 17139685 (-) False zbtb47b
XR_004576965.1 other downstream 425271 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other downstream 425272 16830696 ~ 16879883 (-) False oxsr1b
TU393587 other downstream 2239345 14965813 ~ 15065810 (-) False LOC113541115
TU395488 other upstream 597973 17907894 ~ 17908812 (-) False LOC113541127
XR_004576970.1 other upstream 600017 17909938 ~ 17916556 (-) False c22h11orf65
TU395529 other upstream 615154 17925075 ~ 17926835 (-) False zmp:0000000991
trnay-gua_3 other upstream 1069115 18379036 ~ 18379121 (-) True trnay-gua_3
trnay-gua_4 other upstream 1069728 18379649 ~ 18379734 (-) True trnay-gua_4

Expression Profile