RNA id: XR_004576949.1


Basic Information

Item Value
RNA id XR_004576949.1
length 2811
RNA type misc_RNA
GC content 0.44
exon number 17
gene id LOC113532648
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8768745 ~ 8821311 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAAAGGTTGAAGTGCGTGGATATTCCCAGCAGCATTAAAAAGAGAAGTGCCATTAAAACAATATATGATAATTCATTGAGTCAGGGGAGAGAAAGGGTGTGTGTCTACAAAAAGAAACGAAAGACAAAGGTGATTTTTAGACTGTAGTGTGTCAGCAGAGAGCCCCATTAAGCTTTCGGCACTGCTTGAGCTGGTTTCATCATGAGAGGAATTGTGGTGTTGCTGTCTCTGTGTCACTTTGTGGCTCTTGTGTGGGGAACCTCAACTTCAATGCCTATACCGGTTTCAACATCTATTGCTACCACTAAAACCACAGGACTACCCACCCCACCATCTCTTACTAATGTTGACACGGTCTCTGTAACAAATCGCACTGAGACGACACTAACATTGGAATGGAATAAagtaaacaacaacagcaattacatttacacactaagCTACAATAGCCAGAATAAAAGTATCAATGGATCAATGGAAAGTCCTGTAGTGACATACAGAGTCATAAATCTTACTGCTGGGACTGAATACAACTTCATTCTCTACACTGTATTTGGAGAAGCTCTGAGCACTGGATACAACTTTACCGAAGTCACTACTCCCCAAAGTGTTACCAACATTACTGTAAAGAATCGCAATGAGACTGCATTAATACTGGAATGGAATAAagtaaacaacaacagcaattaCAGTTACACACTGAGCTACAACAGTCAGAACACCAGCATCAATGGATCGGAAGAAGGTTCTGCAGTGACATACACAGTCTTAGATCTAACTGCTGGGACTGAATACGTCTTCATTCTCTACACTGTATTTAAAGGACTTCAGAGCATGGGCCACAGTTTTACCACTGTCACTACTCCCCAAAGTGTTACCAACATTACTGTAAAGAATCGCAATGAGACTGCATTAATACTGGAATGGAAtaaagtaaacaacaacaacaattacagTTACACACTGAGCTACAACAGTCAGAACACCAGCATCAATGGATCGGAAGAAGGTTCTGCAGTGACATACACAGTCTTAGATCTAACTGCTGGGACTGAATACATCTTCATTCTCTACACTGTATTTAAAGGACTTCAGAGCATGGGCCACAGTTTTACCACTGTCACTACTCCCCAAAGTGTTACCAACATTACTGTAAAGAATCGCAATGAGACTGCATTAATATTAGAATGGaataaagcaaacaacaacaacaattacagTTACACACTGAGCTACAACAGTCAGAGCACCAGCATCAATGGATCGGAAGAAGGTTCTGCAGTGACATACACAGTCTTAGATCTAACTGCTGGGACTGAATACGTCTTCATTCTCCACACTGTATTTAAAGGACTTCAGAGCATGGGCCACAGTTTTACCACTGTCACGACTCCCCAAAGTGTTACCAACATTACTGTAAAGAATCGCAATGAGACTGCATTAATACTGGAATGGAAtaaagtaaacaacaacaacaattacagTTACACACTGAGCTACAACAGTCAGAACACCAGCATCAATGGATCAGAAGAAGGTGTTGCAGTGACCTACACAGTCCCTGATCTTACTGCTGGGACTGAATACACCTTTACTCTCTACACTGTATTTAAGGGAGTGGAAAGCAGAGCCTACCACATTACAAGTGTCACTGTTCCAAATAGTGTCACTGGGTTACACTGTCAGTATTCATCAGGGGGCTATGGTCTAACTCTTGTTTGGGATCCTCCAAATGGCGGGAGGACATTTGTACAGGTCAACATGAGCAGCAAAAGCTTTAGTCACATAGGGGAAAGACTGTATATCGATGGACTACTGCCTGCCCAGTGGTACACCCTTACTGTGTCCGCACTCTTTGGGCCTATGCAGAGTGTCCCAGTTTCAATCACCTGTCAGACTGACCCAAGAGGAGTCATAGCAGGTGTTCTAACATCCCTCCTGCTGGCCATTCTGATCCTCTGTATTGGTATCTATATATGGCATCACAAGCCAGAGCTATACAGCAGGTTTAAATCCTCTAATGAGACCGAACTGTCCAGTAATAAGTACAAaccAATTCACCTGAAGAAGTTTCCAATGCACTTTAGCTCCATGAGTTGTGATCAGAACCGTGGTTTCAGTGAGGAATATGAGGATTTAAGTACAGTGGGTACAGATCAGAGTTGTACAGTTGCTACACTTCCTGAAAACAAGAGCAAGAACCGATTTACCAATGTACTGCCCTATGATATATCTCGTGTGAAGCTTGCTGCACAGACTGGCTCTGATTTGGACTACATCAATGCTAACTACATTCATGGTTATGGCAAGAAAAACAAGCAGTACATTGCTGCTCAGGGTCCTCTCCCCTCCACTGTCAGTGACTTCTGGAGAATGGTGTGGGAGCAGAAGTCCTCAGCCATTGTCATGCTGACCAACTGTACTGAGGGAGGAAGGaTTAAATGTGAGCATTATTGGCCAGTGGACGACATGCCCTGCCTCTATGGAAACCTGCGGGTCTCTGTCCAGTCAGAGCAGAAAGAGAGTTGCTGGACTCGACGAGAATTTGTTGTCAGAAATCATGGCCTGATCATGGAGTTCCTAAAGGAACAGAAGAGTTGATTCAGTTCCGTTGGATTGTTCGTCAGCACATCGAGACCTTCCCATTTAGTGGACCTACCGTGGTACATTGCAGTGCTGGAGTGGGTAGGACAGGTACTCTAATTGCCCTTGATTTGTTACTGCAGCAGATGGACAAAGAGGAAGTGGTCAGCATTGCTGACTGTGTACGTTGCATGAGGCTTTCCCGGCCTCTCATGGTACAGACTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU390105 lncRNA upstream 19712 8748820 ~ 8749033 (+) True G329288
TU389928 lncRNA upstream 69585 8694403 ~ 8699160 (+) True G329126
TU389908 lncRNA upstream 102909 8652436 ~ 8665836 (+) True G329111
TU389845 lncRNA upstream 390011 8374954 ~ 8378734 (+) False osr2
TU389833 lncRNA upstream 432163 8336352 ~ 8336582 (+) True G329042
TU390192 lncRNA downstream 127318 8942878 ~ 8945556 (+) True G329354
TU390202 lncRNA downstream 157677 8973237 ~ 8973587 (+) True G329361
TU390394 lncRNA downstream 519626 9335186 ~ 9335808 (+) True G329523
TU390393 lncRNA downstream 536590 9352150 ~ 9352733 (+) True G329522
XR_004576957.1 lncRNA downstream 657056 9472616 ~ 9482817 (+) True LOC117595781
XM_026924114.2 mRNA upstream 22775 8677355 ~ 8745970 (+) True atp6v0a1b
XM_026924116.2 mRNA upstream 22775 8677355 ~ 8745970 (+) False atp6v0a1b
XM_026924117.2 mRNA upstream 22775 8677355 ~ 8745970 (+) False atp6v0a1b
XM_026923965.2 mRNA upstream 189671 8558567 ~ 8579074 (+) True LOC113532557
XM_034298179.1 mRNA upstream 218507 8388187 ~ 8550238 (+) False LOC113532774
XM_034298068.1 mRNA downstream 24006 8839566 ~ 8851316 (+) True zgc:101569
XM_034298066.1 mRNA downstream 35844 8851404 ~ 8922793 (+) True bmp6
XM_034298065.1 mRNA downstream 36904 8852464 ~ 8922793 (+) False bmp6
XM_034298063.1 mRNA downstream 37454 8853014 ~ 8922793 (+) False bmp6
XM_034298064.1 mRNA downstream 37454 8853014 ~ 8922793 (+) False bmp6
TU389909 other upstream 102909 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 283912 8388187 ~ 8484833 (+) False LOC113532774
TU389428 other upstream 866137 7901792 ~ 7902608 (+) False LOC113532663
TU387482 other upstream 3430494 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 3838591 4924786 ~ 4930154 (+) True srsf10a
TU390118 other downstream 37768 8853328 ~ 8856276 (+) False bmp6
TU390686 other downstream 976124 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1615773 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1779642 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 2058649 10874209 ~ 10984209 (+) True acad11

Expression Profile