RNA id: XM_034297948.1


Basic Information

Item Value
RNA id XM_034297948.1
length 1662
RNA type mRNA
GC content 0.51
exon number 12
gene id efhb
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 3701334 ~ 3712518 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCAGggtgggaaaaataataaagttagCCTTATCCAGATATACACGTTTATGATGATTGTTTTTGAAAGGACATCGAGCGCCTGGAGACGCAGGGACACTTTCCCTAATATCAGAGCGGCAGGGAAAGTTATACCACAAGGAGACAGGGCACAGGCATGTCTGCAGGAAATAACCCCAAGGTCTGAGACGCCCCCGGTGGTTAGGAAGTTCCTCAACAGTACACATCCGGAGCCAGGGAAAATCCGTGCATTCTTCGGGAAAGCAGATGATCCTGATATCGCCAGCACACTGGTGCATGGAATAAGCACGGGGTCGTCTAtcagtgctGGACCTGTGATCAACCCGCCACCTAAGACCCGCTACCAAGAGAGGCTGCGAGAGCTTCGGGAGGCCACTTATGGCGGCAGACAGAAAGCTCCAATTGGACGGACCCAGGTTATGGGTCCTGGGCTTCCAAATGGTCTTGATCCTGAAAAAACAACTTTTGGTGTTAAATTACTTTATTCTCTTAAGGCTGGTGAGATCATCAATCCACCAAAAACAGCAGAGCAGGTTGAACAAGAAGCGCAGGAGGGACACGAGCAATACATCCGCTCACACAGTTCCTACTTTGTTGGTGAGCGTGTGAACAGGAAGTATGACTTGAGAAGTTACAGGAAGGACAGTAGGTTTGGTGTGGCCACTCCACATCGCATTGATGGACACAACACCAGAAAGTCTCTCCAATGGCTCTGTGATACACAAACGAACCACAGTGCAAAATTTGTCTCGAAGCGATGTGACGACTTCAGAGAGAGGACACAGCCGCAGACCGGCAAAGTGCATGACCCAATCGCAGACACCTTGCGGGTTCCGGCTGATCACACATTCGGAGCGTTGCTGCGTCCTGATGAGTTTGGTGCAGCAGAAGTCCTGCACGCCACGCCAGCTTCAGAGCACAGGAAAGGACAGGACAGACGTTGCGCGCTGGTCAGCACCGTACGCCAGCAGCTGAAGAAGGCCAACTTCCAGAACTTCACCTCTTTACTGCAAGCATTCAGACACTATGATAAGAAAGGCCAGGGACGTATAGATAAGGAGGACCTACGGGATGTGTGCCGCGAGTTTAACCTGGACCTCAGCGCAGACATCCTGGACGACCTTATCGACTACTGCGACGTTGATAAAGATGGGCTAATTAACTTCCTGGAATTTGCAAATTTTCTCAGTTGGAAGGACAAAATGCCGATCAGTCAAGAGGAGCAAAGGATTTTGACAAGAGAGCGGAAGCCCAGCACGGTCTCGGTTATCAGCATGAGAGCCGGGGAGCAGGAagcagacacagagaaacaggCTGGAACTGAAAGTCTGGCCAAGAGTGGAGACCTGGAACCTGTGAAGGTGGGGAGTGTCCTGAAAACCCCGAAAACACTGCACAGAACTCGAGCAGAGCCAGAGCGCTTCATCACCTCATCCTCTGCCATCTGCGGCATCGTGGGTGAGCTGGCTGTTAACGATGGAGCAGATTTTCCGGAACGCTGGCCTGTGTATTCCCGATCAGATGTTTGAGGAGGTCTGGAGCTTGGCTTCCAGGAGTCACCCAGCcggagaagtgtgtgtggagagttTTCGAAACGTTCTCAGTGAGCTACAGGCAAATTAAAAAAGGATGCGTATTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386120 lncRNA downstream 379934 3319915 ~ 3322362 (-) False LOC113532799
TU386121 lncRNA downstream 382048 3319815 ~ 3320248 (-) False LOC113532799
TU386063 lncRNA downstream 450849 3230021 ~ 3251447 (-) True LOC113532533
TU386074 lncRNA downstream 464968 3209206 ~ 3237328 (-) True G325780
TU386073 lncRNA downstream 501046 3199227 ~ 3201250 (-) True G325779
TU386393 lncRNA upstream 8171 3720689 ~ 3796359 (-) False znf385d
TU386460 lncRNA upstream 109387 3821905 ~ 3878517 (-) True G326133
XR_004576980.1 lncRNA upstream 161405 3873923 ~ 3881884 (-) False LOC113532993
XR_003403379.2 lncRNA upstream 161405 3873923 ~ 3881845 (-) True LOC113532993
TU386553 lncRNA upstream 244985 3957503 ~ 3958995 (-) False vsig10l
XM_034298123.1 mRNA downstream 30163 3616595 ~ 3672133 (-) False LOC113532763
XM_034298124.1 mRNA downstream 32009 3616595 ~ 3670287 (-) False LOC113532763
XM_026924364.2 mRNA downstream 39132 3616595 ~ 3663164 (-) False LOC113532763
XM_026924365.2 mRNA downstream 39132 3616595 ~ 3663164 (-) False LOC113532763
XM_026924362.2 mRNA downstream 39132 3616595 ~ 3663164 (-) False LOC113532763
XM_034297811.1 mRNA upstream 19712 3732230 ~ 3796368 (-) False znf385d
XM_034297810.1 mRNA upstream 19712 3732230 ~ 3796368 (-) False znf385d
XM_026923903.2 mRNA upstream 19712 3732230 ~ 3796368 (-) True znf385d
XM_034297813.1 mRNA upstream 19712 3732230 ~ 3760993 (-) False znf385d
XM_034298264.1 mRNA upstream 180369 3892887 ~ 3915968 (-) True nek10
TU386070 other downstream 463149 3237701 ~ 3239147 (-) False LOC113532533
TU385328 other downstream 1604861 2088259 ~ 2097435 (-) True G325145
TU384835 other downstream 2251580 1429932 ~ 1450716 (-) False kif13a
TU384829 other downstream 2331267 1370476 ~ 1371029 (-) True G324748
XR_004576952.1 other downstream 2600179 1047583 ~ 1102117 (-) True nek11
TU387191 other upstream 1251099 4963617 ~ 4977453 (-) False ubr5
TU387192 other upstream 1251099 4963617 ~ 4977527 (-) False ubr5
XR_003403372.2 other upstream 2116956 5829474 ~ 5978379 (-) False zfpm2a
TU388042 other upstream 2163578 5876096 ~ 5978268 (-) False zfpm2a
trnam-cau_47 other upstream 2717342 6429860 ~ 6429932 (-) True trnam-cau_47

Expression Profile