RNA id: XM_034297951.1


Basic Information

Item Value
RNA id XM_034297951.1
length 2426
RNA type mRNA
GC content 0.42
exon number 6
gene id LOC113532857
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5236219 ~ 5240172 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGATCGTGTATGAACAAGAAGCTGAAATAAGAACAATTTCGTTGAGGTTTTTTCGTCTGAAGAAGTGAAACAGAAGCCACATAAACTCGTTAGTAAGTGTGTAGCTGATGAGGCTCTAGCTATGGCGTCTAAACGTTCCTTCTCTGAAGAGGACTTCACGTGCcctgtgtgttgtgatgtgtttaagGAGCCCGTGCTCCTGTCGTGCGGTCACAGCGCGTGCAGCACCTGCGTTCACCGGTACTGGGATGTCAAAGGCTGCCGAGAATGTCCACTTTGCAGGAAACGATCTGCTAGAAACCCTACTATCAACCTGGCTCTGAAAAACCTGTGTCAGACCTTCCTGGAGGTCCGAGGTGATCCCGAGACACTCTGTGACATCCATGGAGAAAAGCTGAAACTTTTCTGTGTGAATGACGGACAGGCCGCGTGCTTGGTGTGCAGAGATTCCAGCAAACACCTACAGCACCAATTCATTCCTGTCGACGAAGCAGCTGCTGAACAAAAGCATTTTCTTACAACTGGACTgaataaattgaaattaaaaatgaagagCCTTGAAGATCTCCAGTTTCATTGCCATCAAAATGTAGATCACATAAAGGCCAAGTACATAAAGAATCAGATGAATGTCGAGATTCAGGAACTTGTGCAGTTTCTTATGGCGGAAAATGTAGCCATGGTGAGCAAACTGGAGGAGGAGGTGCAGGAGAAATTGCAGTCGgtggaaaacaaaataaaaaatatcagacaaaaaaaacagtctatCTCACGCACCATTGGAGtcataaaaaatgatttacaatCTGAAGACATCAAATTCCTGAAGCATGACCTTAAGAAGTATCTGACAAAgactcAGGGCAGAGATTCAAATTCCATTGTGAAGAAGAACCTTGATTCAAAATTGGTTTCAAAAGAAGTGATTGATGTTGCAAAGTACCTGGGTAATCTACAGTTCAGAGTCTGGAACAAAATGCAGACCGCTATTAAATACACTCCTGTTGTTTTGGATCCAAACACAGCTCACTCGCAGCTCATCCTGTCCCCGGATCTGACCAGCGTGAGAGACAGTGATGATGACCACGAAGACCAGGCTGACAAGCCGAGACCTCCAGTTTTGGACACTCCTGAGCGGTTTAGGAGTTTGTGTGTCCTGGGGTCTGAGGGCTTCTCTTCGGGGCTGCACTGTTGGGATGTTGAGGTGGGAAACAGCACCTTCTGGATGCTTGGAGTGACCACTGAGACTGTTCAGAGAAAAGAACCCAATGTTTTTCCCAGAGGAGCTTGGGGTATTGGGTATGATGGTGAAAAGCTGTGTGCTCGATCCCCTTTGGAAGTGTATACTCCTCTCACTTTGGCTGCCAAACCCCAGATGGTCAGAATTCGTCTGGACATGGATTTAGGGGAGGTGTGGTTCTTAGATCCTGCCAGTAATGACATTATCCACATGTTCTCACACCAGTTCACTGGGAAGGTCTTTCCCTTCTTCCACAGCATGTGCAGTCTATCTCCTCTGAAGATTATGCCTCTCAAGCATTTTGTGGTGCTGAGAGACATCCCTTAATGCTCATGTTTCTACAAGTGATAAGTGGCAGTGGCTCACATTCTCAACTATAGTCCATATTtaaagctgtaatgtttttattctgttgtAGCAACAGATCTGTTGTAGATGTGGCGATATGGAGAATGTGAAGTATTATTCAACTGTACATGTCAATACAGTTCGTTTTGTTTTCTGTACCTTTCATGGCTAAAGGAGAAAAAGATGGAGCTGTATGACAGGATATATTGCATCAAGTGTTTGTTCACATTTAGACATAATGCTGTTGCACTTTAAAACTTGTCTTCTATATCTTGTGCTTTACTATATTctaatatttcaatttaaactGTGTGAGTTATTAGTCATAACTTAGCTCAGGTGATATTGTTCCATTCTCATCCTGGTTCTCCCCTAGTTTACCTGggtggaagtgtttttttttttcttttcttttttgtctgttttattttggcGGTATTTTCCCACTCTGAAATGGCACAGATTTCCAGAAACAAACATGAATAACACTAAATGCTATCTCAAATACCAGTTGTTGCAAAGCAAACTTGGATTCAAAAATGGTTGTAACCTTTCCAAGGTTATTTGTTTCCTAAAATAGCCCAAAAAATAGTTATGTTTCCTGCAATTACTGTGTCATTCTTCTTTGTgtcatatattaaatattatccCAAAGTGTTTCCATTCTAATGGGAGAAGTGATATTGAATGCCATTCTTTAAAACCTCATGTCACCTTCTGGCAAATCACAATGCAGGAGGCAGGCAACAGTCTGTAAATGAGACTTTATAATAGCTATTATAAAACTCTTATATTGGCTATATAATGACTCTTTTGTGGGGTAGGGCATGACTTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386838 lncRNA upstream 206429 5019782 ~ 5029790 (+) True G326462
TU386818 lncRNA upstream 246903 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 252539 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 311583 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 432160 4803837 ~ 4804059 (+) True G326429
TU387473 lncRNA downstream 71059 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 301186 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 365698 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 592821 5832993 ~ 5833262 (+) True G327385
TU387927 lncRNA downstream 602047 5842219 ~ 5842438 (+) True G327391
XM_034297885.1 mRNA upstream 2170 5228577 ~ 5234049 (+) True LOC113532508
XM_026923897.2 mRNA upstream 2170 5228577 ~ 5234049 (+) False LOC113532508
XM_026924956.2 mRNA upstream 32815 5190018 ~ 5203404 (+) True ncam3
XM_026924083.2 mRNA downstream 963 5241135 ~ 5248144 (+) True LOC113532629
XM_034297954.1 mRNA downstream 963 5241135 ~ 5248144 (+) False LOC113532629
XM_034297955.1 mRNA downstream 963 5241135 ~ 5248144 (+) False LOC113532629
XM_034298250.1 mRNA downstream 8738 5248910 ~ 5254552 (+) False LOC113532776
XM_026924395.2 mRNA downstream 8741 5248913 ~ 5254552 (+) False LOC113532776
TU386814 other upstream 306065 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 312538 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 1222681 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2666480 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 3021958 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 92096 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2661620 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3148015 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3374901 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3528573 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile