RNA id: XM_034297961.1


Basic Information

Item Value
RNA id XM_034297961.1
length 1700
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC117595668
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 15285508 ~ 15288765 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACACACGCAGAGATAcgcactcagacacacacacactcacacacacacacacacccaggcttCTACAGTCTGCCTCATCCAGCCAGAATGCGCTTGCCTTTCTCCAAACACCCCTCCTCTCGGAGGAGCTCTACCGCTTCCTGCTGTCCGGTGATGGCGGGTTCCGCGGTCATTTACTGCGTCACGTGCGATCAGCCGCTCAGCAGCCGCTGCGTCATTAACGGCGCGCACCGGGACCACCGGCTGAAGGACCTGAAGGAGGCCGTGCACGATCAAGTGAAAAGATTAAATGACCTTTCCGGGAAGCTGACATCCAAAGAAAGGAAGTTTGGCGACATCACACCAAGGATTGAAGCAGCAGAGCGCGAGCTCGAGGAGATATGCAACCGGACACATGAGCTGCTTCAGCACGAGTACAGTACCCTGATGAATTTGATCGAGCAGAATCAGCAGCAGGCCTTTTTCATCCTGAATGTGCAGAAGGAAACAATAAAGCGGCAACTCCAGCAGCTGCACGAGGACACACAGAACTACCAGAGCAAGTCCACAGCCATGGCCGAGGACATAAAACAGCTCAGCAGCAGAGAGGAGAGCGACAACCCAGCCAGCCTGCTGGGAGAGATCAGCGCACTTGAGACCAGCTTGCACACGATGAACGAGTTTTACTCCTCTGTGGACAAGAAGCTGAAAGTCGATGACACAAGACTGAAAGCTCTGGAAAACTCCATTAAGAAAATCGTGGACAAAAACAGAGACCTTCTGCCACGGCCATGGGAATTCTCGGAGACCATCACTTTGGATCAGAATAAAAATCAAGGCAATGTCCAGATCTCAGAGGACAAGTTGGAGATGTCAGTGAGCCCTTCAGACTGTCTGGGCCTTACTGCTCGCTCATCATGGTGCACCATGCGGGCATCTCAGAGCTTCAGTGAAGGCCTGCATTACTGGGAGGTGGCAGTAGGAGGCTGTGAGAGCTGGGCGGTGGGCATAGCAGAACAAAGCCGGGTTAGAGGCATCCAAACTCAGGCTGCGAGCCAGGAAAAGAATTTGTGGATTCTGGAGTGCGATGGTGGTGAGCTCTCAGTGCTGCACAACAACGACTTCAGCAGGGTCAAGGAGAACAATATTCAAACCCTTGGCGTCTTCCTGGATTGGAGTAAAGGGCGACTGAAGTTCTACAATGTCAATACAGGCAACATCCTGCACTCATTTATTGCCCAGTTCAAGCACGCCGTTTATCCCACGTTCCGCATTCGTGCACAGAAAGACAGTGTGGCACGGCTGAAGATCTGCAACCTGATGCACCAAGATGAAGGGCACTACGACAGCGTCAGTACCTCCGTAATCTCAGAGATGCCAATTGAGGAGGCTATGGAGTTGTCTTCTGAGGGCTCACATTAggacatgattttaaaatgttaacatgTGTAACAATGCTaacatgcatatttattttaactactgtctatttattaaaatgcagtgtTATGAAGGAAGAGTTAATGACATTTATCAGtaaatgctgtttatttgtGTAGACCACTGTACAAATGttgctgttttattaaatgtttgaatAATGTCTCAACAGACTATGgctcattttcttgttttattggtGTTTAAAGCTctttttaggatttttcttctcctttaaATCCTTAAAAGCTTTAAATCAAGTGGTACTCTAAGTGCTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU393373 lncRNA downstream 488310 14714217 ~ 14797198 (-) True G332196
TU393330 lncRNA downstream 650582 14544032 ~ 14634926 (-) True G332164
TU393312 lncRNA downstream 720804 14537252 ~ 14564704 (-) True G332147
TU393340 lncRNA downstream 762893 14513735 ~ 14522615 (-) True G332169
TU393844 lncRNA upstream 56507 15345272 ~ 15397132 (-) True G332580
TU393913 lncRNA upstream 277422 15566187 ~ 15566646 (-) True G332637
TU393941 lncRNA upstream 326735 15615500 ~ 15618841 (-) False sec61g
TU393956 lncRNA upstream 331741 15620506 ~ 15620717 (-) True G332676
TU393962 lncRNA upstream 341458 15630223 ~ 15630444 (-) True G332682
XM_026938248.2 mRNA downstream 1353 15276583 ~ 15284155 (-) True LOC113541332
XM_034297841.1 mRNA downstream 10432 15273126 ~ 15275076 (-) True LOC117595763
XM_034298262.1 mRNA downstream 16244 15267358 ~ 15269264 (-) True LOC117595804
XM_026938192.2 mRNA downstream 40483 15229216 ~ 15245025 (-) True rdh10a
XM_026938082.2 mRNA downstream 164590 15111698 ~ 15120918 (-) True dcaf11
XM_026938050.2 mRNA upstream 48614 15337379 ~ 15380275 (-) True LOC113541204
XM_026938052.2 mRNA upstream 50736 15339501 ~ 15370567 (-) False LOC113541204
XM_026937949.2 mRNA upstream 109516 15398281 ~ 15414443 (-) True LOC113541141
XM_026937950.2 mRNA upstream 109518 15398283 ~ 15414441 (-) False LOC113541141
XM_034298225.1 mRNA upstream 128339 15417104 ~ 15559455 (-) True LOC113541144
TU393587 other downstream 219698 14965813 ~ 15065810 (-) False LOC113541115
XR_003404167.2 other downstream 348104 14936886 ~ 14937404 (-) False LOC113541102
TU392350 other downstream 2607575 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 2607575 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 4202357 11082268 ~ 11083151 (-) True G330379
XR_004576965.1 other upstream 1541931 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 1541931 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 1827333 17116098 ~ 17139685 (-) False zbtb47b
XR_004576994.1 other upstream 1896759 17185524 ~ 17239106 (-) False vipr1b
TU395488 other upstream 2619129 17907894 ~ 17908812 (-) False LOC113541127

Expression Profile