RNA id: XM_034297979.1


Basic Information

Item Value
RNA id XM_034297979.1
length 1880
RNA type mRNA
GC content 0.46
exon number 13
gene id atp6v1c1a
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 5008544 ~ 5019097 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCAGCTGACTGTGACGCGCTCTGGAAACACCACTGTTATGACATTATGAATGTCCATTCGTACGATTTACCGCTTTAAATAATAACCCAGTCATAgacaataattaatattttatctgCTTTTTTACCACGTGTATCCTCGCCTAACCCAGTGTTCAGTCATGACGGAGTTCTGGTTGATCTCGGCTCCTGGAGAGAAAACCTGCCAGCAGACATGGGACAAGCTGATGGTGGCCACCACTCGCACCAACAACCTGTCCACTAACAACAAGTTCAACATCCCGGACCTCAAGGTCGGGACGTTAGATGTTTTAGTCGGACTCTCAGACGAGCTGGCCAAGTTGGACTCTTTTGTAGagagTGTGGTGAAGAAGGTGGCGCAGTACATGGCCGACGTGCTCGAGGACAGCCGTGATAAAGTTCAGGAGAACCTGCTGGCAAACGGAGTGGATCTGATCACCTACATCACGAGGTTCCAGTGGGACATGGCGAAATACCCCATAAAGCAATCTTTGAAGAACATATCTGAAATCATATCTAAGCAAGTAACGCAGATTGATAACGATTTAAAGGCCCGAGCTTCAGCCTACAACAACCTGAAGGGAAACCTGCAGAACCTGGAGAGGAAGAACGCAGGGAGCCTGCTGACCCGCAGCCTGGCCGACATTGTAAAGAAAGAAGACTTTGTGCTCGACTCTGAGTACCTCGTCACTCTGTTGGTGGTGGTACCGAAGACAAATTATGCAGACTGGCAGAAGACGTACGAGACTCTCGCGGAAATGGTGGTGCCGCGGTCCACAAATTTGCTGTTCGAGGATCAGGACAGTGGGCTGTTCAGCGTCACGCTGTTCCGCAAAGCCATCGACGACTTCAGGCACAAAGCCAGAGAGAACAAGTTCGTGGTACGAGATTTCCAGTACAACGAGGAGGAGATGAAGGCGGATAAAGAGGAGATGACGAGGCTCTCCACCGATAAGAAGAAGCAGTTTGGTCCTCTGGTGCGATGGCTGAAAGTGAACTTCAGTGAAGCCTTCATCGCATGGATCCACATCAAGGCTCTGAGGGTGTTTGTGGAGTCTGTGCTAAGGTACGGCTTACCTGTGAACTTCCAGGCCATGCTGCTGCAGCCCACTAAGAAGAACATGAAGAAGCTGCGGGAAGTGCTGTATGAGCTCTATAAGCATCTGGACAGCAGCGCTGCTGCGATTATCGATCAATCTGCTATGGACATTCCCGGGCTGAATCTGAGCCAGCAGGAGTATTACCCCTATGTCTACTACAAAATCGACTGCAACCTACTTGACTTCAAATAATCCACAAAAATAATCCAGCACTGCACGCCGTCACATCCCACAGCTCTGTGGTTCAGTCCTAGTGAAGAAGTGTGAGATGATGTTTCACTGAGTTGTATATTTATcctttcacctctctctctctctctctctctctctcgctttcttgctttctctctctctctctctctctctctctcatatgtTCATTCCTGTTCTGAGATCCTCCTCGCCCTGCTGCTCACTCCAGAGTGTGTGACTGCCGTCCCCATCAtgtttacaggattttttttttaaactaagatcatctctgtatttataaGTGAATGGATCAGATctgtatctatatataaaagaaGCAATTCTGTGTTTTAATATGATCGTCATTCCATTGTAGGTTAATGCTTTGTGTTTGTTCCATTTCAGAGTCACTAATAGATATTTTGTTGTATGAGGACGCAGGTGTCTTTACCTTCTCTGTATCAGTAGTTCCACGCAGAGGAACGAATTGTGTTACAAACGATACAATAATGGACAATGTGTTGTGTAAATTTGATGttgatgaaatataatatatatgtgaaaaa

Function

GO:

id name namespace
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02148 ATPeV1C, ATP6C; V-type H+-transporting ATPase subunit C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386818 lncRNA upstream 19228 4985490 ~ 4989316 (+) False klf10
TU386834 lncRNA upstream 24864 4983473 ~ 4983680 (+) True G326458
TU386812 lncRNA upstream 83908 4924178 ~ 4924636 (+) True G326440
TU386800 lncRNA upstream 204485 4803837 ~ 4804059 (+) True G326429
XR_003403355.2 lncRNA upstream 205033 4800572 ~ 4803511 (+) True LOC113532560
TU386838 lncRNA downstream 685 5019782 ~ 5029790 (+) True G326462
TU387473 lncRNA downstream 292134 5311231 ~ 5314589 (+) False acbd7
TU387573 lncRNA downstream 522261 5541358 ~ 5541889 (+) True G327071
TU387696 lncRNA downstream 586773 5605870 ~ 5607099 (+) True G327178
TU387921 lncRNA downstream 813896 5832993 ~ 5833262 (+) True G327385
XM_026924263.2 mRNA upstream 19697 4984415 ~ 4988847 (+) True klf10
XM_026924264.2 mRNA upstream 19697 4984416 ~ 4988847 (+) False klf10
XM_026924600.2 mRNA upstream 78389 4924781 ~ 4930155 (+) False srsf10a
XM_026924089.2 mRNA upstream 84873 4921173 ~ 4923671 (+) False fabp10a
XM_026924871.2 mRNA upstream 90075 4864569 ~ 4918469 (+) True myom3
XM_034297834.1 mRNA downstream 27869 5046966 ~ 5056667 (+) True cep72
XM_026924631.2 mRNA downstream 78044 5097141 ~ 5105422 (+) True trip13
XM_034298188.1 mRNA downstream 79312 5098409 ~ 5105422 (+) False trip13
XM_034298189.1 mRNA downstream 79487 5098584 ~ 5105422 (+) False trip13
XM_026923906.2 mRNA downstream 91976 5111073 ~ 5140807 (+) True nkd2b
TU386814 other upstream 78390 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 84863 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 995006 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 2438805 2565700 ~ 2569739 (+) False G325435
XR_003403390.2 other upstream 2794283 2210222 ~ 2214261 (+) False LOC113533074
TU387482 other downstream 313171 5332268 ~ 5338251 (+) True G326997
TU389428 other downstream 2882695 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 3369090 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 3595976 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 3749648 8768745 ~ 8815560 (+) False LOC113532648

Expression Profile