RNA id: XM_034297984.1


Basic Information

Item Value
RNA id XM_034297984.1
length 3735
RNA type mRNA
GC content 0.41
exon number 5
gene id si:dkey-118j18.2
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 13737766 ~ 13749633 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGGTATCGCCCATCCCTACTGAATTCGGCACTGAAACCCCCTAGAAAATGGCTGATCCCTAGTATGCACACTACATGCAGAAGATGGCGATTTGAGACGCGTCCTTGCGTCTCAGGTTTTTTGTTACGGAAGCTGAGTTAGCCATGCGCAAAGATTTATTAATGTAAGCGCataaaaaacaactaaaaaaaaaccccgaAGTGAGCGATAGTGTCTGGAAAACAGCACAGAACTAAGAAAAAAACGCGTTTAGGTTTTAATTTTTGACGGAGAATTGTGTTGTTTTTCGATAGTTTATTTACACGCGCTGTGTTTGGCCATTAAACACGAGCCACATTCCTCGCTTAgctggaaaataaacaaacgCAATGCTAGCGGCTAATGGACTGTAGATAACGAGCAACGCGGCGCGAGCCAGACTGAAGATTATGAAGATTGATTATGAAGACTGATTCAGACTGAGAAGGTTAAACTATGGAGCTCTACTGGTACATAGTTgtcataatatttattatgataAAGATCTTCTTCTACGTCTGCTGGTACCGCTCAAGACAGAGGCAGCTGGCCGCATATCTCAGTAATCCACGCAATGCCCAGATCGTTATTGTGGGAGGAAGAGCCTATCTGCACCAGATGTGCGAGAACCAAAACACGTCAATCTGGCCGAATTGGTACGGAGTTCAGGACGATGGCTCCGTAGGCGAACCGTCCGtttctcttcctccatcttCATCCCTCTCTCATCTGGATTTACCCCCTCCATACGAGGCTGTTTCTGGAGCGGACGACCTGAAGCCTCCTCCGTACAGCGAGTTTGCTCAGAATGACGACACGGACACGTCTCAGAGCATTGCAATCCCAGAAGGCAACAATTCGAGCATCAGCGATGACCCGCCTCCATACACCCCCACTGCCAATCAGCACACCAGCGTTCAGTGCCAAGCGGAGCCTGAGGGGGGATCCAGCTAGTCTCTTCCAATGTCAGTTCTCAGTTTTGTTCACAGCAAGGGCTGTATTTCTCCATGCAGTTGCTCAGCGTTTAGTTAGGGACTCATTCTTTTGTCAGTTTTACTCTTAATAAAGGTGCATGAGGTGGATTCTAGACATCGTAAAAGATTAGGGGAATTtggtggtttaaaaaaaaattaagaaaaagaaagtggcCTAATAATGTTCTAGAAATGTTTCTCTTCTAGAAGAAATGAGATGGtgagctgctttggtgttaatgggTGCTTTAAGCTCACTCATGCCTTATTTTGATTTCCTCTTATATAACCAGCATCATGATGATAACACACTTGTGTACCATGTTTTCTAGACAGTATGTCGCACCGGGTATAAGTATGAATTCTTTCCGCTTAGAGCAAACATTCATATATACGTTGCTTTGTTGTGTAAGTCACTGTAATGTATCCATCTTCTTATTTTACATATAGTATGTTCTGCTTCTAAAACAGCACTTAAGCACACCTAAAGCCTTGTTTTTGCTACTGAAAATGtcataacacattttcttttacttttaaactGAAACCTCCTTATTTACTCAATAAGGACCTTTTGTTGGTGTGAACACTGCTGCTCTGATAGTAATTTCTGCTAGCAACGATCTGTCCATCACCATTGGAAGTATCAAGGTAATAGTAGTGTGCCCTCCAATAACCGTACTGTAACAAGTGAAATAGAACGCCTACCGTAAAACAAACTCATCACTGTACAAGTTACACCATCTGCATCTGATGGTCTGGAAAATATggttacacacacagaaaaacacacacaccccactgcGTTGACCTTGTCCTATATGCATTTCAACTTTCTGAGATTTAATGACTGCTTTAatgcaggggtggacaaatgataaatatattaGCTAGCCCTCCTGGCAAGTGGAAGCTCCAGTGTGTTGCCCAGATTCATATTTAGGTTGCCCAGAAACCTAATTGACTAGGTTTAAAAATGGTAGGTAACATGATTTAATAACATATGGATAGTTAGTTATGCTCATTAATACAAAATAAGGGAAACGAAACAATTACATGACACAGGGAGTCCTTATCTTCATCTAATAaagttttaatgtattaaaagtCACCAGGTTGTTGTTGAACATTTTGGCTATGAACTAGCGTTCTCGTCTCAAATCACAGTATAAATATTACTTGACTGATTATTACTTGGCTGGCAGTGTTCCTACATACTCGCTTattcctgatttaaaaaaaaagctgtcttcTGTAATCTGCCtagttaaaaaaatcattctacCACCAGCCAGATTGCTGCTTGGCCGATGTGTCtagtgcagcaggtggaggGATTTGGAAGCATGTGCTATTTACAGCATCGCTGTGCGTTGTATCAGTGCATTACTTTTAAGCATACACATGAAATTAAAACTTCAGTAGTCAGTAAGAAGTatggtttatttttgctttctctggttgttgaacctgcTTGTTGGACTGCTGGGCAActatgactttaaaaaaaaaaagacctaaaTGCCTGGACATAAAATCTGTTAGTCCCAGGCACCTGGGCCCCTGGGCccctgatttgtccacccctgtagTGTGTCCACCTTGAATTAAGTGTACATAAGTGTGTAGATTGACCAGTGCCATGTTAGAATAAGATTTTTCAGATGTAGACGTGTTGAGAAACATTTGTTCTCGTCTCTATAAATGCCCAAAGGGAGAGGATTCTGTGCAGAGGTTTAACCTCATGTTTATGCATAACCTCGCTTTGTATGTGATGACAATTTCTAAAACTATCCCTAAGCACTTTTATGTCTTGTAATTGCCTtacttctgtctgtgtgtactgtaagtaggcatgtgccgataatAGGGTGTACAGTATAGCTCAATATTCAAGTTATCATGGACTCTTAAAGCTATCAGAACCATCCTCGCATTGCATTCATGAGGAATTAAGTTTCATTCAGAAGGCTGGGTCCTATCTGCTCCCTCCTTCATATCGTGAATGAgatgcattttgttttcagttaaaATGCTGCTATGCTTGTGAGAACAGGTCctgataaacattttattttcttaacttGATATCATGATGTTATCATAACCGTGATAAATGTTACTCACTTATCGTGATATGACAATGTAATATCGGCACACGCCTATTTGTAAGCGGCGAATATAATTAATGATCATCGGAGTCCACGTGGCAATGatgatgtgtgtaaatgcagAGAGTATGACTGCCGTACTCTTTGGCTTATCAGGTGACCgtaatgattttatgcatttacacCACACAGTAATGAACTCGCCTTCTTTATGATTTCtttcagtatgtgtgtttggTAGTAGACgttcatattaatgttaatgtgttttgaagAATGTATGACTGTGCAGTTGTCAAATGTATCAGGTTAACATTCACTTACTGGCCAATTTATTAGACACACCTACCTTATTGGTGGCTGATGCACCTGTACCAGTGCCACACAaactaccatgtcagtgtcactgctgaaCGGAGAATGAACcatcacccaaataatatctgtttGGTAATGATCATATGATAGTCCTTTTCCACTAATGGACAGGGTAGAGGGGGCTAAGATTTGTACAGAGCGACAGATGGGTTACAGTATTTATACACTTGTAAAGTGGCCAGTATGGTTGGTGAATCTGTTAAAATGGTCAATAAGTAGCTACCAtgtaataaactggcaactcaatGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU392679 lncRNA downstream 323955 13412902 ~ 13413811 (-) True G331569
TU392678 lncRNA downstream 330308 13406386 ~ 13407458 (-) True G331568
TU392674 lncRNA downstream 355331 13380609 ~ 13382435 (-) True G331565
TU392669 lncRNA downstream 389909 13343614 ~ 13347857 (-) True G331560
TU392655 lncRNA downstream 458380 13278136 ~ 13279386 (-) True G331546
TU392965 lncRNA upstream 10859 13758929 ~ 13759290 (-) False LOC113541105
TU393198 lncRNA upstream 718324 14466394 ~ 14466613 (-) True G332056
TU393340 lncRNA upstream 765665 14513735 ~ 14522615 (-) True G332169
TU393341 lncRNA upstream 769569 14517639 ~ 14521648 (-) False G332169
TU393312 lncRNA upstream 789182 14537252 ~ 14564704 (-) True G332147
XM_026938143.2 mRNA downstream 19651 13509875 ~ 13718115 (-) True sema5a
XM_026937940.2 mRNA downstream 331689 13397268 ~ 13406077 (-) True cct5
XM_034298206.1 mRNA downstream 365723 13361369 ~ 13372043 (-) True eif2s3
XM_026938164.2 mRNA downstream 365755 13361369 ~ 13372011 (-) False eif2s3
XM_026938161.2 mRNA downstream 377669 13351341 ~ 13360097 (-) True zfx
XM_026937955.2 mRNA upstream 1221 13749291 ~ 13754357 (-) True timm21
XM_026937896.2 mRNA upstream 9588 13757658 ~ 13762615 (-) True LOC113541105
XM_026937887.2 mRNA upstream 17789 13765859 ~ 13867147 (-) True neto1l
XM_026938268.2 mRNA upstream 206487 13954557 ~ 13968348 (-) True fbxo15
XM_026938270.2 mRNA upstream 206487 13954557 ~ 13963943 (-) False fbxo15
TU392350 other downstream 1059833 12676581 ~ 12677933 (-) False LOC113541288
TU392351 other downstream 1059833 12676581 ~ 12677933 (-) False LOC113541288
TU391338 other downstream 2654615 11082268 ~ 11083151 (-) True G330379
XR_003404157.2 other downstream 2806991 10923126 ~ 10930775 (-) False ackr4b
TU391129 other downstream 3214503 10522732 ~ 10523263 (-) True G330185
XR_003404167.2 other upstream 1188816 14936886 ~ 14937404 (-) False LOC113541102
TU393587 other upstream 1217743 14965813 ~ 15065810 (-) False LOC113541115
XR_004576965.1 other upstream 3082626 16830696 ~ 16879884 (-) False oxsr1b
XR_004576964.1 other upstream 3082626 16830696 ~ 16879883 (-) False oxsr1b
XR_003404146.2 other upstream 3368028 17116098 ~ 17139685 (-) False zbtb47b

Expression Profile