RNA id: XM_034297990.1


Basic Information

Item Value
RNA id XM_034297990.1
length 2820
RNA type mRNA
GC content 0.52
exon number 18
gene id sh3kbp1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 20050736 ~ 20112391 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtaacggagcagcagcagcagcagcagcggccACATCACACAGCTCTTCTCCTCCGCTACATTGTCGCCGCTCTGCTTTCATCTCGCGCGGGGACGTAACGGAGCGCGAGGCGAGCGGGGGGACATTGTGCGCGCGAGCCGTGCCGTGTCTCGCCACTGAGCCGTTTAAAGCCGCGTTTTCTGTTTCAGcgtcattttgtttttgttttgtttttttttccctctgaagCTCGCAGCTCCTTCAACTCCACTGAGCTGgagagttattattattattattatttttactttatttattactctttttttttctttttcttttttcattctccaGCCCTCAGTCTCCGGGAGGATCACGAGGCggaaataaagtttataaatgGtggagGCTGTAGTGGAGTTTGACTACCAGGCCCAGCACGATGACGAGTTGACCATCGCCATCGgtgacatcatcagcaacatcagGAAGGATGAGGGGGGCTGGTGGGAGGGCGAGGTGGACGGCCGGAGGGGCCTGTTTCCAGACAACTTCGTCAGGGAGATTAAAAAGGAGGTGAAGAAGGAGCTCAGCTCGGCCTCCCAAGTGGCCAAATCGGATCTGTCCAACGGCAGCGCCAGTCCCGGATCAGAATCCAGCCTCAGACCAGCCAAGAAAGGAGAGGCCATACGGAAGAGACGCTGCAAAGCCGCCTTTAGCTACATCCCGCAGAATGAAGACGAGCTGGAGCTCAAGATCGGAGACGTCATCGAGGTCCTGGGAGAGGTGGAGGAGGGCTGGTGGGAAGGATGTCTCAACGGCAAGACCGGAATGTTCCCTTCCAACTTCACTGTACAGCTGCCGGCCGACACGGAGGATCTGACGTCCCCACCTGAGGACACACGCAGCACACGGACCAgtgtgaagGACAGCACGGGCTCGGAGAGTGACGGAGGAGACAGTAGCAGCATTCGTTCAGACGCAGGCAGCGTCGCCTCCAGCAGCGAAATTCAGCCCAAGAAGGTGCGCGGCTTCGGATTCGGAGACATCTTCAAAGATCAGCCCATTAAGCTCCGCCCACGATCCATGGACCTCGACAGCGAACTGGAGAAGCTGACAGTGAAGAAAGCAGCGCCGTCTGTTCCTCAGGAAACCATGAAGACGGAACCTGAAAACAAGGCCAAAGTGAAGGAGCTCTGTAAAGTGTTATTCCCGTACGACGCCCAGAACGAGGACGAGCTGTCAATCAAGGAGGGAGACATCGTTACCATCGTCAGTaaggagtgtgccGATGCAGGCTGGTGGCTCGGCGAGCTGAACGGTAAACAGGGTGTGTTTCCCGACAACTTTGTGAAGCTCTTTGTTCCCGAGGTGGAGAAAGAGaggcCTAAGAAACCGCCTCCTCCTGCAGCACCCACTACTAAACCCATCACAGACAAAAAGCCAGAGGTTAAAAAGGTTCCTCCCGAGCGGCCCGAGTCTCTTCCGCAGCGAGCCGAGGAGAAAGGTGATGAAATCAAGTTGGTTGAGTTCCAGAAGCCGGTGCTTCCCATCTTTCCACCGAAGAAGCCTTTACCCCCGAAGAGCAACAACTCCCTGACCCGACCCCCTAAACGACCCGAGCGACCCGAGAGACCCGAGAGACCGGCCGCGCCCAGCGCACAgtgtgacAGTTCTGGTGTAGCTTCAGATCGGACGTCCTCAGACAAATCAGCTGAAATCGATATAGACGACTTCGACTCCATCGTCTCCTCCACAGAGAAGCTGAGCCACCCCACTGCCTCCAGACCTCGAGTCACAGACCGCCGACCTCGCTCTCAGATCTTCACAtcttcctctctctccagctctgacCTCCTGGACTCGCTGTCTCCGGAGGacgaacagagagagagggagaaggggaAGGACGAGCCGGACTCATTCCCTCCCAGATCTCTCGACAACACCAGGAAGATGCCCAAGGCACTGCCCATCATCACAGCTCCTGAGAAGTCCTCCAAACCCTCATCTCTGACCACAACTCCAGGTGCCGCTGCCCTCAGGCCTCACTCTCCCTCCATTGAGGCCAAGATGAAGAGCGAGCAGGGTTCCACCGTGCTGGAGGAGCTCAGAGCTCAACTACGAGAGCTGAGGGCCACCGTGGAGCTGATGAAGAGCCAGCACAAACAAGAGATGAAACAGCTTGTGAGCGAACTAGATGAGGAGAAAAAGATCCGCTTATCCCTGCAGatggATGTCGAGAACATAAAGAAGGTTCTGTCCAAATGAACGCACGTGATGCGGAAGTGGTTGAGGTTGGAAGGCAGAAACTCCGAACGCCTGGCAGACGGATTTGtgccaaaagagaaaaagaacaaaaaacacgCAAGAAGAACAGCAGCATAGAGAAAACAAACGAATGCTTCCCTCACTTccagattattttttattttattattttccatcgTGTTGAGGAGGAACCCATCTTCTCCCGGTACTGCGTTCCATCGAGCGACTCGACACTTTAAGCGACGTGAAGGAGAACCCGCTGCGTTTGCCTTCAGTACGGTTCACTTTAAGttcttttctttgcctttaCCTTCGTggcctttctttttattttcctcgTCGTTATCCGTGCGGCTGTCGCTCTCCTCTCGCCCACGCTGAGGCCTtctttatttctaataaaatcATGTCTTTTCTTTCTGACTTTCATCTGCGATAAGGAGAAAAtgcacattttgttttcttgatGCTGTTTCTTCTTTTGAGAAAGTCTTAtataaacttttatattttaatgtacggaaaatgcatttatgtgtgcaaattttattaaaaaagaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU397088 lncRNA upstream 21246 19965544 ~ 20029491 (+) True G335345
TU397044 lncRNA upstream 62701 19985544 ~ 19988036 (+) False camk2n2
TU397020 lncRNA upstream 167901 19870381 ~ 19882836 (+) False smpx
TU397022 lncRNA upstream 167901 19870896 ~ 19882836 (+) False smpx
TU397023 lncRNA upstream 167901 19870896 ~ 19882836 (+) True smpx
TU397133 lncRNA downstream 62388 20174778 ~ 20189323 (+) True G335381
TU397134 lncRNA downstream 62599 20174989 ~ 20189323 (+) False G335381
TU397137 lncRNA downstream 95134 20207524 ~ 20208617 (+) True G335383
TU397353 lncRNA downstream 148181 20260571 ~ 20260807 (+) True G335558
TU397355 lncRNA downstream 157165 20269555 ~ 20269825 (+) False mynn
XM_026938021.2 mRNA upstream 62701 19985332 ~ 19988036 (+) True camk2n2
XM_026937999.2 mRNA upstream 163180 19884047 ~ 19887557 (+) True LOC113541169
XM_026938019.2 mRNA upstream 168384 19870392 ~ 19882353 (+) False smpx
XM_026938018.2 mRNA upstream 168384 19870432 ~ 19882353 (+) False smpx
XM_026938138.2 mRNA upstream 300682 19740057 ~ 19750055 (+) True LOC113541258
XM_026937986.2 mRNA downstream 3624 20116014 ~ 20152049 (+) True map3k15
XM_026937987.2 mRNA downstream 3624 20116014 ~ 20152049 (+) False map3k15
XM_026937988.2 mRNA downstream 3624 20116014 ~ 20152049 (+) False map3k15
XM_026937989.2 mRNA downstream 3624 20116014 ~ 20152049 (+) False map3k15
XM_026938016.2 mRNA downstream 47877 20160267 ~ 20163036 (+) True ccl20b
TU396960 other upstream 261679 19788583 ~ 19789058 (+) True G335231
TU396585 other upstream 366867 19678481 ~ 19683870 (+) True si:ch73-264p11.1
TU396584 other upstream 366867 19679997 ~ 19683870 (+) False si:ch73-264p11.1
TU396524 other upstream 473664 19576111 ~ 19577073 (+) True G334838
TU396402 other upstream 690000 19339206 ~ 19360737 (+) False dap
TU397154 other downstream 48010 20160400 ~ 20163106 (+) False ccl20b
TU397368 other downstream 161730 20274120 ~ 20275691 (+) False lrrc34
XR_003402672.2 other downstream 632359 20744749 ~ 20764373 (+) True vipr2
XR_003402673.2 other downstream 632359 20744749 ~ 20764373 (+) False vipr2

Expression Profile