RNA id: XM_034298031.1


Basic Information

Item Value
RNA id XM_034298031.1
length 1557
RNA type mRNA
GC content 0.52
exon number 8
gene id mtfr1
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 18315354 ~ 18323295 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTATTGGCTCTTGGGTGACGTCTCTTTGAGAAACAGTTTTTCGTTAGCAACAAACGGTGTTGTTGAGTTAACGAACtggaaaaaaacagctgttcGGCGCAGATGGAGGTAAACCGGGTGTAGCAGATTGACTCCGGGTCAGTTTGAAGATTAGATAAGTTTgtgACCGAGGTGAGGCACTCAGCATGGCAGAACATCACAGAGCAGTTTTAAGCGACTCGGTGTGACGATGAGAAGGAACGATGCGAGGATAGAGATGGACCTGGCTTTTGGATCAGCGAAGCCTTATGGGTCGTCTCGCAGTATCGTTAGATGGATCGGCTCGACCCTCCCTCTGGCGCCATGCCCTCGGGTCCACTTTCagCTCCAGACATTCGCTATCGGAGCTGGAGCAGGAGCTGGAGCAGGAGGCGCGGGCGGTCCAGGAGGACATGGCGGGCTCGTAGCATCGCTAGCTGACGTAGGGTGGATCGAGCAAGAGGAGAGCGATGATGTCTCTGACAGACGGCGGTTGGAGGCAAACTCTGGGCTGGTGTTTCGCACTCAGCAGTGCCCACCGCTCAGACGCCAGCACTCtttacccagcatgcaccagGCCGTGCCCGCTCCTCAGAGCCAGACACTCGTCAACGAGCAGGCCATTCAGAAGATCAGCGCTTTGGAGAACGAGCTGGCTAAGCTGCGAGCCCAGATCGCTCAGATCGTACAGGCTCAGGAGCGGAACGCACAGTCTGCAGCTCCTGCTCCAGGTGGTCCTTCTCCTCCACCCTCAGCACCTCCTCTTGcgcctcctcctccaccaccaccaccaccaccacctcctccacctccacctccaggCCCAGGCATGCAGAGGAGCGTTTCTGCTATTGACCTCATCAAAGAGCGGCGCAGTAAAAAGTCTGAGCAGCACACGGTGTTGGAGTCAGGGCCTAAACAGCCCGAGATGCCTAACATGTTAGACGTGTTGAAAGACATGGGCAAAGTGAAGTTACGCTCCGTTAAAAGTGCTCGTCTTGAGGAAGATCACACCAAGACTAAAGCCAGTGAACCCGCAGACCCCGCTGCTCTTATCGCTGAGGCTCTGAAGCGCAAGTTCGCCCATCGCTACCGCAATGACAGCGAGTGTGAGAGCAACTTCAGTCTCCCTGCTCGAGAATCCAAACCACGCTCAGAGACGCCTGCGTTCGGACAGCACATGTTGAAATCAACAGGAATGAGAAAACACGTGTGACGGCGGATCTGTGAGCTGCAAATCACGTGTGTACACACAGGAACAGACACTAAGCGCTCAGTCTGGTTTTCTGCACCAGCAGCATTGCAGATCACCGTAATCACAGAGTGTTGCACAATGCAACAGGAACCTGCTCGTTTTTATGCCTCGTTTATGCAAAGGACCAAAAAGCACGTTCACGTTCACGTCATGTCAGAATTACAGGAATGTAAAGATGACAACTCTTCTCAAATATGCACAATATCGAAAACCAATACatattttttgaaatattttcatttttcactaattagtaaaaaaaaaaaacactaaaaagctGAATT

Function

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0000266 mitochondrial fission biological_process
GO:0005739 mitochondrion cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395656 lncRNA upstream 111674 18203063 ~ 18203680 (+) True G334077
TU395657 lncRNA upstream 112449 18200395 ~ 18202905 (+) True G334078
TU395608 lncRNA upstream 206550 18085319 ~ 18108804 (+) True G334032
TU395604 lncRNA upstream 235984 18079151 ~ 18079370 (+) True G334028
TU395574 lncRNA upstream 270177 18043824 ~ 18045177 (+) True G334005
TU395829 lncRNA downstream 112426 18435721 ~ 18437406 (+) True G334209
TU395830 lncRNA downstream 115854 18439149 ~ 18439446 (+) True G334210
TU395831 lncRNA downstream 116960 18440255 ~ 18440656 (+) True G334211
TU395842 lncRNA downstream 151389 18474684 ~ 18478739 (+) False mcmdc2
TU395840 lncRNA downstream 177488 18500783 ~ 18530907 (+) True G334219
XM_026937924.2 mRNA upstream 98148 18214863 ~ 18217206 (+) True bhlhe22
XM_026938136.2 mRNA upstream 217439 18087647 ~ 18097915 (+) True ythdf3
XM_026938188.2 mRNA upstream 331934 17973204 ~ 17983420 (+) True lipib
XM_034298173.1 mRNA upstream 351883 17960988 ~ 17963471 (+) True zgc:112408
XM_026938160.2 mRNA upstream 363728 17942428 ~ 17951626 (+) True chodl
XM_026938225.2 mRNA downstream 49427 18372722 ~ 18378196 (+) True dnajc5b
XM_026938222.2 mRNA downstream 56996 18380291 ~ 18390865 (+) True trim55b
XM_026938223.2 mRNA downstream 57150 18380445 ~ 18390865 (+) False trim55b
XM_034298263.1 mRNA downstream 72932 18396227 ~ 18432150 (+) True si:dkey-97a13.12
XM_026937814.2 mRNA downstream 87341 18410636 ~ 18432150 (+) False si:dkey-97a13.12
TU395491 other upstream 322340 17986762 ~ 17993014 (+) True G333943
TU394795 other upstream 1013657 17292031 ~ 17301697 (+) False G333388
TU394801 other upstream 1015343 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 1020300 17287160 ~ 17295054 (+) False G333388
trnaa-agc_15 other downstream 56007 18379302 ~ 18379374 (+) True trnaa-agc_15
trnaa-agc_16 other downstream 56647 18379942 ~ 18380014 (+) True trnaa-agc_16
TU396015 other downstream 369854 18693149 ~ 18717953 (+) True G334373
TU396386 other downstream 1015911 19339206 ~ 19360737 (+) False dap
TU396388 other downstream 1015911 19339206 ~ 19427936 (+) False dap

Expression Profile