RNA id: XM_034298037.1


Basic Information

Item Value
RNA id XM_034298037.1
length 3274
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC113532999
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1286989 ~ 1295529 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTACACTTTCACAAACTTCttctttttgcatattttctcAGGAACACATTTTACTTCTCATTTATTATTACCACTTCAGTGAGCTAAGTGTACGCGCAGACACAAAGCTGATCGCAGctacatttgttaacagcagaGATGAAGATGCTTCACCTGGTTTTGATTCTACTCACGCTGTCTGGTGTGCAATCCTCTAATTATGGTGTGAAATATCCCGATAAGCTGATCTGTGCTGTGAGAGGATTCAGTGTCTCCATTCCCTGTAGCTATTTTTATccagaaaataatcagctggTAAAAAAGCTTTGGTGCTCAAAAACAGAGTGGTGTATAGGCCCACCGTATGTTTATGACAGCTCATCAAAAAACAGTCCAGACTTTGTTTATGCTGGAGACGACAAATCAAACTGCACTTTGTTAATCCACAATCTACAGTCCAGTTATTCTGGAATGTACAAATTCAGATTTACAACTAATGTGACCGATGGCAAATATACAGGTGTACCTGGAGTGACTCTACAAGTTGCAGATTTAAAGGTGTCACTAATCAGGCTCAGTGGAAATGGAACCCTTAAACAAGGAGACTCGTTAAATCTGACGTGTGATGTGAACTGCCCACACAGTTCCTCACAGTTTGTGTGGTCTAAGAACAACGAGCAGTTAAACACATCAGGACCCGTTCTTCACTTTCCTGCTCTAACCGTGAGGGATTCTGGGAATTACACCTGCATTTGGAAAACCAATGAGACATCAGGATCTGAAACTGTCAGCCTTCAGGTTGAGGGTGTTCTCACTCAGAGCAGTGGTTGGGGTGTGAAATATCCTGAGCCGGTTTGTGCTGTGAGAGGATTCAATGTCTCCATTCCCTGTTATTATTGGTATCCACAAAATTATCGGGTGGTGCAAATGCTTTGGTGCTCAATGAACTCAAACAGAGATGTGTGTACAGACCCACCGTATGTTTATAACAGCTCATCAAACATCAAGTCAGACTTTGAGTACGTTGGAGACAACAAATCAGACTGCACTTTGTTAATCAACAATGTACAGTTTAATTATTCTGGAACATACAAATTCAGATTTATAACTAATGTGATCGATGGCAAATGGACCGGTTTACCTGGAGTGATTCTACAAGTTGCAGATTTAAAGGTGTCACTAATCAGGCTCAGTGGAAACGGAACCCTTAAACAAGGAGACTCATTAAATCTGACGTGTGATGTGAACTGCACACACAGTTCCTCACAGTTTGTGTGGTCTAAGAACAACGAGCGCTTACCTGCATCAGGACCTGTTCTTCACTTTCCTGCTCTAACCGTGAGGGATTCTGGGAGTTACACCTGCACTTGGGAAACCAATGAGACATCAGGATCTGAAACGATCAGCCTTCAGGTCAAGGGTGAAAATCCTGATCATGGCTCAATCTTGATCATTGCTGTGGTGACAGCTGCAGTGATTTTCATCATCTTAGTCCTCTTAGGAGCTGTGATTTACAACAGGAGGCGGAAGGACGACGTTCCAGAAGACAACAGCAGAATAGTTGGAGAGCAATCACAGGTAAAGCAGGTTCCTCAGCCCAATGGAGAAGTGTCGCAGGAGGAGGAAGTGACTTATGCATCGGTTTGTGTCAAAGACACCAATCCGAACAATGGGAATGTCCACACTGAGCAGCAGAATGAGGACATATCCGTTATCTACAGTACTGTGACAATAAAATGAATACGTCTTTGGTGTCATATATGGAGGAATTTACTTTACTCGggcagcttaaaaaaaaaaaaaaaaaaaaaaaaagcttgtaaaTACGCAACAATGGTTGGCGACTAGAAGCTCGATTCAGAGTGCACACTGGCGACACCTGCTGGTgaagaggatgtgtgtgtgtgtgtgtgtgtatatatacgcACACTCCTGCTGCCCAATGTGATGTGATCCTGACACACTTTTTTCTGCTTGATCAGTTCTAAATGCTCTACTCCTGCTTCTTTGTCTTAGAGCTTTCTACACGTACGACTCACCTTCCTGCTGCAGGAGATAATCTCCTCTGGAAACCACAGATGTAAAGTTCCTAAGACGTGCTGCTGTAATTGTAAAGACAGTCTCATGCTCATTTCAGGATTCTGATTCACAATATGATCATACATAACATTCCATatcatttcaacacacacattactgccTTTTctctgtaatgatttataatcccactatccagtttGACCCAGAAGCGGATCTGTTGTCTCTTTAattctggtttctctcaaggtttctttctcatgccCTCTCGAGAGTTTTTCCTTCCTTGTCACCTCTGGATTGTCAGATTAGGgacctaaatctacatccagatttctgtaaagctgctttgttgttaaaagcattaaaaaaaaatttgaactgattttgatttttaaaattgaattaaaatatttttaaaattttttttgtaatgttgcaGATGATAGGTTACTTAATAGCTCTGATACTATATCACGTTGgcattttctacttttttttctcttaaactgtagtaataaacatatcaaatatcaacagaaaaatgtttagttCACTTTTTGTCCACTCACGACCACCACATTATCTTAAAGCTCTGCCCACTTCACAATCATGTGATGTCCTATATCCCTCAGCTTGTTTCCtgatatatacatgtatgtgtCGTTAtgatatacatttatatacaatttcctttataaaccttataaatcACACTAACTAGACTGGAAACTAATTTaaccacattttatttttttcctcaaaatcaaattaaaatttattttctatattcaaAACTGAATATCTCATTTTCTAGGTGAGCTGCAATAATGAAATTGTCCATGCCTATTCCTAATTAgaatataacagatataacagAGAAATTTCCCAAAAAGTTTGGTTATATCAGATCAGCGCCAGAAGCAGTGTTCAACTACAACTCCCAAAGGACATTGAGGCTTACAGTCATGACTCCATGGACTCCATCTCCTGACACACATGTTCAAGCTCAACCAGGTATACTGATCAAGCTCAGTGTAGCCTCGTCTCGTGTTGCTCAGTGTAGCCTCGTCTCGTGTTGCTCAGTGTAGCGTCGTCTCGTGTTGCTCAGTGTAGCGTCGTCTCGTGTTGCTCAGTGTAGCGTCGTCTCGTGTTGCTCAGTGTAGCGTCGTCTCCTGACATACCAAGCCTTACTGTCTGTGATCTTTGTCCCCTGATTTCTGAATCTAGTCTTGCCTTGTTTTGCCCTTTTGTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384805 lncRNA downstream 100912 1119771 ~ 1186077 (-) True G324726
TU384810 lncRNA downstream 117658 1144586 ~ 1169331 (-) True G324731
TU384808 lncRNA downstream 159372 1126844 ~ 1127617 (-) True G324729
TU384710 lncRNA downstream 331597 887291 ~ 955392 (-) False G324649
TU384712 lncRNA downstream 331597 951850 ~ 955392 (-) False G324649
TU384802 lncRNA upstream 107760 1403289 ~ 1405287 (-) False kif13a
TU384959 lncRNA upstream 270430 1565959 ~ 1568506 (-) False LOC113533106
TU384971 lncRNA upstream 373573 1669102 ~ 1674907 (-) True LOC117595768
TU384972 lncRNA upstream 373573 1669102 ~ 1674907 (-) False LOC117595768
TU384975 lncRNA upstream 373573 1669102 ~ 1674907 (-) False LOC117595768
XM_026924640.2 mRNA downstream 1110 1281446 ~ 1285879 (-) True LOC113532917
XM_034298041.1 mRNA downstream 1197 1281446 ~ 1285792 (-) False LOC113532917
XM_026924893.2 mRNA downstream 11150 1273393 ~ 1275839 (-) True LOC113533061
XM_034298036.1 mRNA downstream 52707 1125904 ~ 1234282 (-) False LOC117595783
XM_034298035.1 mRNA downstream 52707 1228293 ~ 1234282 (-) True LOC117595783
XM_034298080.1 mRNA upstream 15346 1310875 ~ 1342071 (-) True scap
XM_034298081.1 mRNA upstream 15346 1310875 ~ 1330952 (-) False scap
XM_034298082.1 mRNA upstream 47450 1342979 ~ 1346644 (-) True elp6
XM_026924586.2 mRNA upstream 52500 1348029 ~ 1359488 (-) True sacm1lb
XM_026923904.2 mRNA upstream 65528 1361057 ~ 1368677 (-) True gpatch3
XR_004576952.1 other downstream 184872 1047583 ~ 1102117 (-) True nek11
TU384611 other downstream 559355 726627 ~ 727634 (-) True G324579
TU384497 other downstream 930368 350738 ~ 356621 (-) False slc4a7
TU384829 other upstream 74947 1370476 ~ 1371029 (-) True G324748
TU384835 other upstream 134403 1429932 ~ 1450716 (-) False kif13a
TU385328 other upstream 792730 2088259 ~ 2097435 (-) True G325145
TU386070 other upstream 1942172 3237701 ~ 3239147 (-) False LOC113532533
TU387191 other upstream 3668088 4963617 ~ 4977453 (-) False ubr5

Expression Profile