RNA id: XM_034298040.1


Basic Information

Item Value
RNA id XM_034298040.1
length 1529
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC117595784
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 1138279 ~ 1166958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAAGAAGAGATGAAGATGCTGCACTTGGCTACAATTCTGCTCACGCTGTCCGGTGTTCTCACTCAGAGCAGTGATTGGGATGTGAAATATCCTGATAAGCCGATCTGTGCTGTGAGAGGATTCAGTGTCTCCATTCCCTGTAGTTATTATTATCCAACATCAAATCCCAAGATTCAGGTGACACAAATGCTTTGGTGCtcaatgaacacaaacacaggaaggtGTTTGGATCCACTGTATGTTTATGACagctcatcaaacaccaactcaGACTTTGAGTACGCTGGAGACGACAAATCAAACTGCACTTTGTTAATCCACAATCTACAGTTCAGTTATTCTGGAGAGTACAAATTCAGATTTATAACTGTTCAGCCTAGTGACAGATACACAGGTCATCCTGGAGTGATTTTACAAGTTGCAGATTTAAAGGTGTCACTAATCAGGCTCAGTGGAAACGGAACCCTTAAACAAGGAGACTCGTTAAATCTGACGTGTGATGTGAACTGCACACACAGTTCCTCACAGTTTGTGTGGTCTAAGAACAACGAGCAGTTAAACACATCAGGACCCGTTCTTCACTTTCCTGCTCTAACCATGAGGGATTCTGGGAGTTACACCTGCACTTGGAAAACCAATGAGGCGTCAGGATCTGAAACGATCAGCCTTCAGGTCGAGGGTGAAAATCCTGATCATTGGTCAATCTGGATCATTGTTTTAGTGACAGCTGGAGTGATTTTCATCTTCTTAGCTGTTCCAGCTGTGATTTACAACAGGAGGAGGAAATTTAAAGCTCCAGAAAAAAACGGGAGGGAAAGTGGAGAGAAAACACAGACAAAGCCACAGTTAAACCAAGTTTCTCAAGTTCCTGATGAAGAAATGATGAACAAGGAGGAAGTGACTTACTCGTCTGTCCAAAACAAAGCAACAACAAAAGgTTCACAGGTCACAGTGCAGCTAAATCAAGTTCCTGAGCCTGATGAAGAAGTGTTAGATAAAGGAGGAGTGATTTATGCATCCGTGTGCATCAAACCCAACAAACCAACCGAAcgGCGAGTCCACACtgagcagcaggagcaggacgATTCTGTAATCTACAGCGCTGTGAAAAAGGCCTGATGACGCTTTCACACCTCATTCACCCACAGTGCAGATGAGTTTTATTTAGTAATCATCATAATGCCTGTGGTTTCTCCATGCATGTAACTCTGTAGGATTTAAGACTTGCTAATGTCATAGGAAGTGTCAGTTTATTTGCTGTAAACATCTTGTTTGGAAGgagatttaaaatgaatttgtttaacacattcTTGTGATTTCTTTATTGTAATTCATGTTGTTTTTGAGTAAACAGCTTCTTTTACTTCTTAGGGTGCTTTAAGCCCTATTCAGACAGGTTTAGTTTTACATGTGGAGATGGATTTAATTTCTCAGGGATTTTAGTTCCACCTGAATCCGTCACGTCAGAAATTGTTTACATACATGCAAATGAACGTGTCTGGAAAGGTTACgctgtattttaaaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU384127 lncRNA upstream 384836 749451 ~ 753443 (+) True G324216
TU384129 lncRNA upstream 384836 749451 ~ 753443 (+) False G324216
TU384105 lncRNA upstream 424478 713395 ~ 713801 (+) True G324197
TU384065 lncRNA upstream 529577 607612 ~ 608702 (+) True G324161
TU384063 lncRNA upstream 530736 607045 ~ 607543 (+) True G324160
TU384216 lncRNA downstream 143953 1310911 ~ 1315115 (+) True G324284
TU384226 lncRNA downstream 162689 1329647 ~ 1330871 (+) True G324294
TU384239 lncRNA downstream 172570 1339528 ~ 1368639 (+) True G324303
TU384241 lncRNA downstream 174167 1341125 ~ 1342780 (+) True G324305
TU384269 lncRNA downstream 211588 1378546 ~ 1378940 (+) True G324328
XM_034298039.1 mRNA upstream 14098 1103739 ~ 1124181 (+) False LOC113525078
XM_034298038.1 mRNA upstream 14098 1118262 ~ 1124181 (+) True LOC113525078
XM_026911517.2 mRNA upstream 128056 956584 ~ 1010223 (+) True cpne4a
XM_026911516.2 mRNA upstream 128056 957125 ~ 1010223 (+) False cpne4a
XM_026911500.2 mRNA upstream 182886 934154 ~ 955393 (+) True cmtm6
XM_034298042.1 mRNA downstream 18562 1185520 ~ 1187361 (+) True LOC113541446
XM_026924349.2 mRNA downstream 129918 1296876 ~ 1310714 (+) True ptpn23a
XM_034297827.1 mRNA downstream 314941 1481899 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297830.1 mRNA downstream 314951 1481909 ~ 1484529 (+) False si:ch211-269k10.4
XM_034297831.1 mRNA downstream 314954 1481912 ~ 1484529 (+) False si:ch211-269k10.4
XR_004576993.1 other upstream 128056 957125 ~ 1010223 (+) False cpne4a
XR_004576966.1 other upstream 331751 774289 ~ 806528 (+) True psmc4
TU384116 other upstream 389804 745673 ~ 748475 (+) True G324206
TU384064 other upstream 528270 607612 ~ 610009 (+) False G324161
TU384003 other upstream 531365 606086 ~ 606914 (+) False G324123
TU385279 other downstream 975548 2142506 ~ 2144511 (+) False bola1
XR_003403389.2 other downstream 1043264 2210222 ~ 2214299 (+) False LOC113533074
XR_003403390.2 other downstream 1043264 2210222 ~ 2214261 (+) False LOC113533074
TU385671 other downstream 1398742 2565700 ~ 2569739 (+) False G325435
TU386582 other downstream 2844452 4011410 ~ 4013538 (+) False hamp

Expression Profile