RNA id: XM_034298053.1


Basic Information

Item Value
RNA id XM_034298053.1
length 6143
RNA type mRNA
GC content 0.51
exon number 32
gene id LOC113541191
representative False

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 17636383 ~ 17653613 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGCCCataaactacatttcccagaatgcattCCTAGCACGCGCACACGCCGCCTTCACGGTTGCTAAGGTTTTCCACAGAGTTTAAATTCAGAGACTGAGATGGCCGTTGCATTTACAAGCCCAGATTCCAACATCCCGCAGAACCTACTGCAACTCTCGCATTCGTTCGGCTATGACTGCAGGCGACGAGGAAACCTGCAGCTGCTGGACGAGGACACGCTGGCCTTCGTGGCTGGAAGCATGTTGGTCCTTCTGGACATGAACACCAAACAGCAGCGCTACATCCCCAGCTGCAGCGGAGGAGGCATCGGTGCCATTATGCCTCATCCCAGTAGGAGATATTTTGCCATGGCAGAGAAAGGCAAGCAGCCTgacataattatttatgaatatcCGTCACTGCAGCCCTATCGTAACCTCCGAGAAGGCACGAGTAAGGTCTACAGCTGTGTAAACTTTAATCGTGATGGCACGCTGCTGGCGAGCGTTGGAGGTGCTCCTGATTACATGCTGACCGTGTGGGACTGGAACCAGGAACAGGTGGTGCTGCGCTGTAAGGCCTTCTCTCAGGACGTCTACCGCGTCACGTTTTCTCCAGACAACCCGGGCCAGCTCACAACGTCCGGCTCCGGGCACATCAAGTTCTGGAAAATGGCTGACACCTTCACCTGTCTGAAGCTGCAAGGAATGCTGGGAAGGTTTGGAAAGACCCCTCTGACAGATATAGAAGGCTATGTTGAGCTCCCTGATGGGAAGgtGGTCTCAGGTTCAGAATGGGGAAACATGCTAGTGTGGGATGGAGGTCTGATAAAGGTTGAGATTGGACGTAAAAAGGGACGCACCTGTCACGCAGGACCTATACAGCAGTTCACTCTGGATGAGGGAGAGCTGATAACTGTGGGTGCAGACGGAGCAGTCAGGTGCTGGGACTTTGAAACCATCGATACAGCAGACTGTGTGGACGACAGCGGGCTGTTTGTGATCGAGCCCATGAACGAGCTGATTATAGGCCGCAATGTGAGCCTCTCCTGCATGGTCAGGAGCACCATCCCAGACTCCACTATCTGGTTtgcacagGATTCTAATGGAGGAATCTGGAAACTGGACTTGTCCTTCTCCAATATAaccCTGGAGCCTGAGTGTCTTTTCTCATTCCACGCTGGTGCAATTGAGGGAATGGATGTGTCTGGATTCAGTCACCTGATGGCCACCACTGCATTAGACCGTTCAGTAAGGATTTTTGACTTCCTTTCCAACAAGGAGCTCACAGTCACCCATTACAGACAGGGAGGAAGCACTCTCACCTGGGCCCCTCGTATGGtgtgtggtggtgagagtctgctggtggtgggCTGTGAGGATGGCGTGGTGCGTCTGTTGGAGCTCTATAATCCTCAGAGCCTGGATGAGGTTGCCGAGCACAATCTCCCAGAGCTCCGTCTCAAACAGGCCTTCAAACCCCATAATGCATCTGTGACAGCCATCTCCTACAAGCACAATGGGCAGATCATGGCTACTGGGAGTGCGGATGGCACGGTGTTCTTCTTCTCAGTAGGGGACAGCTATGAGCCAATCGGCTTTGTGACAGTGCCGGGACCGGTGCAGGGTCTGCAGTGGGCTCCTCAGTCACATgAGAGAAACACTCTGTTAGTTGCATGTCAGATGGGTCATGTGGTGGAGGTTGAGGCTCCTGATGCACATGATCCCCCTGAAGGAAACACATACCATCTGCAGAACCTTCCCATCAGGCACTTCTGCTTCCACAGCATCAAATCACGCATTAAGAGGGACGCAGAGATATCTCGCAGACAGGCCTTGAaggagaagagacagaaagagaaggcACTCCAGGAAGTGAAGGATCAGGAACAAACTCCTacagaggaagatgaagaggaagaggaggaggaagaggagttGCCACCGATCTTCATCCCCAATCCCCCCAGTCCCCTTCACTGTGCTTTCTACTCCAATGAGCCTGGAGCATTCTGGCTTTCtgtgggaggCTATGACTCTGGGTATCTGTATCACTGTAAGTTTTCGGAGCAGCAgtctgcagaccagtcagagagGAAAGACGAGCCGTTCGCTTTCGTCCCAGTCCAAGATGCAGATCACAATCCCATCCTCACTGTCTGCTTCTgTGAGGTGAGGCAGCTGCTGCTGTGTGGGATGCAGGATGGCAGTATCCGGGTGTATCCTCTGGAGTCAGGGGACCTGCAGCCGGTGCACATGCAGGCGTACTGGGCACTCGGTGTTCATGACAGCCAGTATGGAAGCCTCCGGCAGCTCCGTGTCAGCCACGATGGCCGCTTCGTGCTGAGCACCGGTGCAGATGGAAACATCTTCTCATTCAGGCTGCTGGagatggaggagatggaggaagcACTACAGAGAGGACACGCAAAAGTGCCCTCACCACGCCTTATCCTGGACACGGAGCCTGCGCCTCTCGATATAGAAGACCCCGCTGcctacagTATAGAGACGGCTAAGCAGAAGCTGGAGTTGGACCGCATGCTTCGAGAGGCTGAATCGAGGAAGCAGGAGCGCCGTAAGAAGCTCGCCGAGTTGCGAAGCCGTTTCAAAGTCCTGCTACAGCAGAACCAGAGTCTGCCGGAGCACGTCCGCCTGCAGCGCTCGGAGCTGGAGTTGGATTGCCGTTTCCGGGAGGAAGTAGAGAGATGGACggctgagagagtgagagaggtgaGGAGAGAATTAGCCTGGGAGATGGAGAGACACCGTATCGGCCTGCAGAAGCTCCAGGAGAGGTTTATGGACTCAGTGGTGTGTGACACAGTGACAGTGTCTGCGATCAGGAGTGATCATAAGGTTTCCACCTACAGGCTGGTAGCTCTGTCCAACAAATTCCACCAGCTGAAGCAGCAGGGAAGAGCCACGCAACATTCTCAGGAGGTGTGCGGCCCTAAAGAACAGAAGGAAACTCACGCTGATGTCATCACAGCAGCAGAGGAAGCTTTACCTGCCACAGCAGTGTTACAGCGACGAGTGCCACAGGGAGCCGGTGGCAAGCTGGCAGCCAGACAGGCGGAGAAACTGCGCAAGGCAGCCGAGAAAGCAGAGAAGGCCCGCGCTAGGATAgagcagaggaagagagagtggGATGAACTCTATGCTGCCAAACCCAGCGAGGACTATGAGGATCCAGAAGACATCCGTGCAATCCAGTTGGCCAAGGAGAACATGGGGGACTTCAAATTGAAGACGGCGCAGGACTACACAGTGCCGGAGCACCTGAGGATGAACGTGGAGAAGAAGACGGCACAATTGGTTGAGTTGGAGGAGCAGATCTACCAGAGGAAAAGCCAGATGAACGTGCGCGTGCTGGCCCTGCGGGACTCAAAGGTGGCTCTCGTCTCCCAGTTCCGCTCCCACATGCACCAGCTGCTGGCCGTTCAGAAGCTTCTTCCCCCGGAGAAGCACCGCCCACCCCCCACCACGCCCGTGCTGACGCCCGAGGAGACGCCTGAGAAGGAGCTGCAGTACAGCCGCACCACGCTGGAACGCTACGCTGCTGCACGGGCCAAAATGAGCCACACCAGCTGGGACGACAAGCACGAGGAGCCTCGGGATGTGCTGGAGATGATGCAACAGGACGTTGATGAGGACACACATGCAGaggaggaacacacacacgcagaggaGGAAGACACCCACGCAGaggaggaacacacacacgcagaggaGGTGCACATACACGCAAGGGAGAACCTCAGTGAGTTGGAGCAGGAGAtgatggaggtggaggagaTTCGCAACCTTTACTTGCAAGACAAACTGAtaagacagATGGCGGAGGCCATGTGCGCTTTCGATGCTAATCTGTGTCTCCTGCGTCATGAGAAAATCAAGCTGGACGTGCAGATGAAGCTGGCTGACCTCCGATACGTCACACTGTTCGAGGAGCTCCTGCTCCTTAAAGAGTTCGAGAAGAGAGAGTTCACGCTACAGGAGAGACGAAATGCCTGCgtgcaggaggagagagagctcaggTCAAAGATGGAGGAGTGTAAATATCAGTTGGAGATGAAGAAGAGAGACATAGCGAAGCTGCACGAGAGAGAGAACGTCCTAGCCTCCACGTTCCAAGATTCACTCGGAGAAAACAACAAGTTTGCAGATTTCCTCACCAGAGTCTTCAAGAAGAAGATCAAACGagtgaagaagaaagagaagccTGGCACCGATGaggaagaagaggagagtGAGGAAGACTCAGATGAAGAGTCAGACTGGGAcagtgatgaggatgatgaagagtCGGATGGAGCTGGTGGCTTTGACGATAGTGTCTGTCCTCCGAACTGCGACCCAGAGCTTTTTGAGAACACTTTAATTTTGCGGGAGCATCGCTTGGATTTGGAGGAGCTTCTGCAAGAGGAGAAGATGATAGCAGACAGCCTGAGGAAGGAATGTGACTCACTTACCAAGAAAGAGAAGATTGTGCAGAgcaacctgaaagcagcagagGGCGACCTGGAGCTCTTAAACCGAGAGAAGCAGCAGAAAGTCAATGAGCTAGATGTGGTTGTCCCGCTGAGGAtacaccagattgAGTATATGAATAACGGCGTGATGCCCTCTGACCTGAGCGGGGCGCTGGTGATGAACGCGGCGTCTGTAAGCCGACTGCACGAGCGCATTAAGGAGCTGCAGCAGGAGAAGAGTGCCCAGAGGCAGTTATACAGACAAGCACGCCAACAACACGTCCAGCTCCGAAACGACCTCAGAGATATGGAGGCCAAGAGTCAGGagTTAAAGGCACACTGTGAGCTGCTGATGTTCAAGAAGTTTGGCAAGCTGGTGGATCTGGAGGCTCTGCAGACTATGAGCGGCAGCCGGAAGCTGGAGGAGATGAAATACGAGAGGCAAGTGCGGGAGGCTCAGAACAGGCAGGAGCTCAGGATGtggcagGTGAAAGTGGCCGCTGCCAAGCAGGAACTGACTGATGTGACCAGAGAGCACACAGCACATCTGCGCAGCCTCAACAGCCTGCTGACCGAGAAAAAGCTGCTGGAGGACAAACTCAATGCCAGGCAGAGGAagatgagtcaTCAGTTCCAGGGATCCCGGCAGGCTGATCAAGAGGACATCCAAAGGCTGCAGCTGCAGGTCCAGAACCAAGCAGAGAAAATTAAATGGCTGAAGCAGGAGATCAGCACCCTGTCTCGCAAAGGTGGCCATGTCCTACCCCCGAGTGAGCCAAGTTTACCCTCCATCCATAGAAACACACCGCTTCAACGTAGGCGTGCTTTACCTTAGACACATTTGGTCCTTTGATTGACTTATACCATATTTTTGAATCCTATCCACTGTGAATCACATATTTATCCTGAGACCAAGATCAATAAAGTATCTATGAGACAAATATAAAATCTCTGGACAAAAACTGCATTGATACAACAACAGCACTTTATTAGATAATGTGGTGATATTAGACGGGatgctaaaatctaatatctatcaatagctcaacAATGATGCTTTGAGGAAcgcattatatcacaaggtctcatcAATGGCGTAATAAATGCCATCAGGTCTGTAATGCTTTCCAGCCTCAGTTCTCACTTCTTTATAGTGTTAGTGGTGTTGGTatgcttggttccacaaaaatccaaatgaATCCATCTTTAAACATCAAAATAGCAggtaatctgatgtggatgccaaaaaacCCTatactgatgtatttttatctttgaaaggtGAGGGCTTATACTGCATTTAACTAAAGCTAACTAAAGTAACTCACTACTTTATATGActttatagtagtatttactttagatcaatcaacatagaCACATTAGTTGGTTAAATCTAACACTAATCGTACAGTTTGCTGTTCTGAGAAAGTAAAACAATCATAAACTCATGATCACTAATGATAACTGGCTAGCTTGCAGCTAAAAAAACACGCTTTCATgaaggcgtccatgtttttcccTATTTCATAACTCCAACCGAACATGCAGACCTCAAAATTTATATAATTCCAAGTTCATATTCTGCGTTCGACGTAAAATGGAAGTGGGAATTACATAATTTTTGACCTCCatgcattcaagctacaaagtggggggaaaaaatggacgTCTCCATGTTcccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU395113 lncRNA upstream 94622 17540637 ~ 17541761 (+) False rnf6
TU395063 lncRNA upstream 189340 17446185 ~ 17447043 (+) True G333582
TU395018 lncRNA upstream 273308 17362871 ~ 17363075 (+) True G333548
TU394762 lncRNA upstream 449708 17186129 ~ 17186675 (+) True G333360
TU394629 lncRNA upstream 738528 16893006 ~ 16897855 (+) True G333244
TU395303 lncRNA downstream 14023 17667636 ~ 17667844 (+) True G333787
TU395307 lncRNA downstream 16803 17670416 ~ 17670625 (+) True G333791
TU395294 lncRNA downstream 54109 17707722 ~ 17712380 (+) True G333779
TU395313 lncRNA downstream 87788 17741401 ~ 17745040 (+) False G333795
TU395312 lncRNA downstream 89665 17743278 ~ 17756282 (+) True G333795
XM_026938033.2 mRNA upstream 6898 17621946 ~ 17629485 (+) False spice1
XM_026938032.2 mRNA upstream 6898 17622103 ~ 17629485 (+) True spice1
XM_034298181.1 mRNA upstream 31190 17543823 ~ 17605193 (+) True atp8a2
XM_026938144.2 mRNA downstream 25285 17678898 ~ 17706118 (+) True boc
XM_026938146.2 mRNA downstream 25285 17678898 ~ 17706118 (+) False boc
XM_026938142.2 mRNA downstream 74240 17727853 ~ 17739585 (+) True atp6v1ab
XM_026937954.2 mRNA downstream 107918 17761531 ~ 17782411 (+) True pan3
XM_026938160.2 mRNA downstream 288815 17942428 ~ 17951626 (+) True chodl
TU394792 other upstream 334379 17287160 ~ 17302004 (+) False G333388
TU394795 other upstream 334686 17292031 ~ 17301697 (+) False G333388
TU394798 other upstream 336372 17285082 ~ 17300011 (+) True G333388
TU394801 other upstream 336372 17287160 ~ 17300011 (+) False G333388
TU394797 other upstream 341329 17287160 ~ 17295054 (+) False G333388
TU395491 other downstream 333149 17986762 ~ 17993014 (+) True G333943
XR_004576961.1 other downstream 661743 18315356 ~ 18323295 (+) False mtfr1
XR_004576962.1 other downstream 661745 18315358 ~ 18323295 (+) False mtfr1
XR_004576959.1 other downstream 661747 18315360 ~ 18323295 (+) False mtfr1
XR_004576960.1 other downstream 662070 18315683 ~ 18323295 (+) True mtfr1

Expression Profile