RNA id: XM_034298057.1


Basic Information

Item Value
RNA id XM_034298057.1
length 2972
RNA type mRNA
GC content 0.49
exon number 12
gene id tbrg4
representative True

Chromosome Information

Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 7029781 ~ 7043670 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTATCAGAACAGCGCGAGAGGAGTGAGCAACTGTCGCGCAACAATGACGTACTCCTTACGCAACAGTGGTTACGACAATATTCCGCGCCTTCCAATGCTAATTCCATGTGAATGTCGCCGGGTCTGaatttttgaaaaaagaaactgaaagCCGCTCAACCGATATGTGGATGCCAAGTCTTGATTTCTAGCCACTCACTTGCTTCACTGAAGATTCTCCCAAATGGCCAGCAGGTTTTTGAGCCGGTGCACTCGCCTCTTGGCCGTATGCCCCCAGGCCTCTTCAGCCGCCGGCCGTCTTCATACGCTCACAGCTCACCCAATCACAGAGTATCCACCATGGTCCCAGTCCCTAACCCTTCCCTCCATCAGGCCCCTGAGTCTGGGTGCTGGTCCAGCGCAGGCAGATGAGCCAACCGTCACATTTACACGCACTGAACTGGATATTCGTGTCGAGAAGGCGACCACACCACAGGAAGTGCTGAGTTTGTGGGTGGAACAAGGCGGCTCCGCCAATCAAGCGGGCATGTGTCTGATCCAACTCAGCCGATTGGCAGTGGAAAAGAAAGATATCAACAGAGAAAGTATCCTTCAGGACCCTCGCTGTGTGGATCTGCTAGAGGCTTTGAACTCTCAGGtgaatgggATATGGAATGGCACACTGGTTTCTGTCTTGCGTGCTCTCTCCATTCTTGGTGTCCCATCCAGCACTCCAGTGATGTGCTCTCTCCAGACGGAGGCACTGTGGCGGCTCCGGCGCTTCAACTACCGCCACCTTTCCTCTCTGGCGGACTGGGCGTCGGGCTGGAAGAGTCAGGGaCAGGGAGATGAGCTACTGACGTCTGTGCTAAAGCAACTGGAGCTGCGCTGGACAGAGCTGAATGACCCACGCACGGTCACCATGCTCATGAGCCGAGCCGCAAGACTCTCCCCTCCGCTCATGGAAAAGCTCGAAGAtaagGCCCTGGAGTTGGCTGAGAAGTTCAGCACTGAGGACATCCGCAGGGCGACGTTAGCCGTGGCATTGCAGGGCCGCCGATCGGTGCCACTCCTGCGTGCGCTGTCCTACCACCTGCACCAGAAACCATCTTCTGAACTCAATACACCACTGCTGCTGGACATCGTGTTCGCTTATGGTAAGCTGCATTTCCACCAGACTCAAGTGTGCCAGAGGATGGCTGCTGAGCTTTTGCCTAGATTACCAGAGATGAGCGCTACTGAAGTCATGCGCTGTTCAAAGTCTCTAGCCTTCCTGAAGTGGCTCCACCTGCCTCTGTTCGAGGGATTTACCCAGCATTTcgtgaaaaacagtgaaaagtaCAGCACGTTGCAGATGTGTAACCTCCTCATGGCCTTCGCCAAGCTCAACTTCCAGCCCAGTAACAAGGAGCCATTTTACACGAAGgttcaTGAAGCTTTGGAAAGCTCCTGGAAGAGCTTGGAACCTTTTGTACTGACTGATGTAGTCTGGGCTCTCTGCGTTTTCCAGCAGGCCAAACCCGAGTTTATTGCCGCTGTCACAGACCCTGCGTTTCAGAGCAAAGTTACAGGAGGCAGTGGTGCTCGTGCAGAGAACTACGCTTTGAAGGTGCTTCATATTGCTGCCTCAGGGCAGCTCGAATCTGGCATGCGTGCCTCCGTGCCGCTTCCAGCAGTCCTTGAAAAACAGACCAAGCCCAGCCTAACACCCGTTCAGAGCACCCTACACAAAGCCCTGCACATCCTCACTGAAAATCGCACAAAAGCGCTGCGCAAAGACATCAACACGGTGTACGGGTGGaacatagATGCAGAAATTGTGGTGGATTCAGAGAATAAGCCCATAGACCTGGAGAACCTGGAAGCGCCACACTTACCTGGAGGGGGCGGCACGGAGCGCTTACCTGAGGGAGCACGCAGgTTGGCTTTTGTGGCCTGGGAGTTCCCTCATTTTGCATCCAGGAGCAAAGATCTCCTGGGCCGCTTCGCCATGCAGAAGCGCCACCTGCAGCTGGCCGGGTTTCTGCTAGTGGAGGTTCCGTACTTCGAGTGGCTGGAGTTGAAGACGGATTGGCAGCGAGTGTCCTATCTGAAGGATAAGATCGGGAAGGCTGTAGCTGAGGACATGGCTAAGTGAGCTTATGGACTGCAGCACATCCACAGACCAAAGCAGAACTtcagaaacacacagcagtgcAAATAAAATTGGGCTCCCAGTTGTTTAGGTACAGCCGGAGACAATCAGAGAGTGAAGGTCATGAAACATTAGTTTATTCACCAATGATAAAAGTTCAAGGACATGGATCTTCAGGAACTTCATGCAGAAATTATATAACACTGAACACTCATCTTTACTCATCActaaattataattatgatgCCATAAATTGTGAGTATCAGAGGTCCCAAAGATATTGTCAGCTTAGGTAGTTCATCAGCATTCTGTATACTGCTATATGTGAAAATCTGCTTATTTCTAAATGTATCTTTGTTTCAAGCTGTAATTTGAAACACATCTGTATTTCAGGTGTATACAACTTTATTTGGTCATTATACAAATTAATTCTGGTTGTGTCTTTTACCTatgtaccattttttttttaaatatatatatatacatcattgGAACAAATTCAGTCTCAAGCATCATACTCAGATAAACAGACTTTATACTGCTTATAATAACCAGCCAGACAAAACGATCAGTTCTGCAAGTCTTCTTAAAAACCGAAAAGGATGTCTCCTCGGAGAACTCTCcttccactaataataaactccCACTTACCAGTTGTGATGTGGTTGCCTAGACAACAAGATGGGGCTTTCCTTGTTGCCAAGGAGACAGTCGTTGAGACTGCTTAAAACTGAATGGGGTGTGCTCAGATCTAAGagtttgaaacatttaaaaaacatgctttttacACATGAAATATATGATTCAGTCATCATTGTGAAGTACAGCATATGGACAGAATAAACTGTTACTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU388815 lncRNA upstream 380 7023155 ~ 7029401 (+) True G328208
TU388766 lncRNA upstream 68405 6949559 ~ 6961376 (+) True G328161
TU388624 lncRNA upstream 321002 6648280 ~ 6708779 (+) True G328024
TU387927 lncRNA upstream 1187343 5842219 ~ 5842438 (+) True G327391
TU387921 lncRNA upstream 1196519 5832993 ~ 5833262 (+) True G327385
TU388835 lncRNA downstream 1376 7045046 ~ 7045278 (+) True G328222
TU388878 lncRNA downstream 84496 7128166 ~ 7136722 (+) True G328260
TU388910 lncRNA downstream 202660 7246330 ~ 7247279 (+) False erp44
TU388944 lncRNA downstream 224064 7267734 ~ 7268762 (+) False G328313
TU388945 lncRNA downstream 224064 7267734 ~ 7268762 (+) True G328313
XM_026924097.2 mRNA upstream 269959 6654775 ~ 6759822 (+) True LOC113532640
XM_026924098.2 mRNA upstream 269959 6654775 ~ 6759822 (+) False LOC113532640
XM_026924697.2 mRNA upstream 703421 6319087 ~ 6326360 (+) True upk1a
XM_034298203.1 mRNA upstream 717223 6304581 ~ 6312558 (+) True zgc:101716
XM_026924312.2 mRNA upstream 945527 6066133 ~ 6084254 (+) True dpys
XM_034298248.1 mRNA downstream 6982 7050652 ~ 7065149 (+) False nacad
XM_026924799.2 mRNA downstream 6983 7050653 ~ 7065149 (+) True nacad
XM_026924800.2 mRNA downstream 6983 7050653 ~ 7065149 (+) False nacad
XM_026924580.2 mRNA downstream 77346 7121016 ~ 7123391 (+) True rbm12ba
XM_034297851.1 mRNA downstream 110153 7153823 ~ 7185065 (+) True tex10
TU387482 other upstream 1691530 5332268 ~ 5338251 (+) True G326997
TU386814 other upstream 2099627 4924786 ~ 4930154 (+) True srsf10a
TU386810 other upstream 2106100 4920980 ~ 4923681 (+) True fabp10a
TU386582 other upstream 3016243 4011410 ~ 4013538 (+) False hamp
TU385671 other upstream 4460042 2565700 ~ 2569739 (+) False G325435
TU389428 other downstream 858122 7901792 ~ 7902608 (+) False LOC113532663
XR_004576973.1 other downstream 1344517 8388187 ~ 8484833 (+) False LOC113532774
TU389909 other downstream 1571403 8615073 ~ 8665836 (+) False G329111
XR_004576949.1 other downstream 1725075 8768745 ~ 8815560 (+) False LOC113532648
XR_004576948.1 other downstream 1725076 8768746 ~ 8819267 (+) False LOC113532648

Expression Profile