RNA id: XM_034298068.1



Basic Information


Item Value
RNA id XM_034298068.1
length 1423
RNA type mRNA
GC content 0.46
exon number 8
gene id zgc:101569
representative True

Chromosome Information


Item Value
chromosome id NC_047616.1
NCBI id CM018562.1
chromosome length 21037487
location 8839566 ~ 8851316 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GCTTTTATTATGATTTTACTAGTCGAAAACGGTTTAATATATCTGGCTTCAACAAGCTGAATTTCCTCACTAACCTTAAACCAAAGCTTTTCTGTATAAAATTTACTTCCGAGCGCTTGAATCCATAGATACAGGCTCAAGATACAGACTGAGACTGTTTAATGTGACATAGATTCAAAGTAGCTATCTCAAACGATGAAGTTTCCGCGACTATCGTTACTTAatttttttctgaacGGAAATACCCTCAAGAAAAAAACTGGGCGACATGAGTGCCTTCTTGGCGCAGGAAAGCGGTTTTGGAGCTCCGGGTGCACTTCCCAAGAGCATCCTACAGCAGGTCAGACAGTGGTTATTGAAAAGCAAGGTCCAGTGCTTACTGTGGGGATTAACAGGCCAGAGGTGCGTAATGCAGTGAACCAAGAGACATCCCAGCGGTTATTTGAAGAATTTTCTGCCTTCAATCAGGATGATACCTTGAGTGTAGCTGTGCTACATGGAATAGGGGGAAATTTTTGTGCTGGTTATGATCTTAAAGAGCTTTCCCAGGATTCGGGTTCCCTCACACTGGAGCAAAATGTTACCCGAGGTCCTGCTCCAATGGGTCCCTCTCGCCTGAGGCTAGCAAAGCCACTGATTGCGGCAGTGAGTGGTTATGCTGTGGCGGGGGGGTTGGAATTGTCCCTGCTGGCTGATCTCAGGGTTGTGGAAGCCAGCGCCATTATGGGGGTTTTCTGCCGCAGATTTGGTGTGCCTCTGATTGATGGCGGGACGGTGCGGCTCCCACGGCTAATTGGTTTGTCTCGAGCTCTAGACCTCATTTTGACTGGTAGACCTGTAGGAGCTCAGGAAGCACTGGCATTTGGACTAGCAAACAGAGTGGTGCCAGATGGACAAGcctTACAGGTGGCTGTTGAACTTGCTGAGCAGATTAGCTCCTTTCCTCAGCTCTGTCTCCGTGCTGACCGTAACTCAGCCTATCATGCAACTTTTGACTCCACCTCGTTCACCCAGGCCATGCAGTATGAGACCGACTATGGCCTGCCAGTAATCACAGCTGAAGCTGTCCCCGGGGCAACAAGGTTCAGCTCTGGCACTGGAAGAGGTGGAACGTTCTCTTGAAAGAcgtgataaatgtgttttttgccCTCCAATAACAATGTACTTGTAATTACTCATGTTTGTAGTATTTTACTTGTGAGAAAAGATTTCAGTGTGATTTTGAGAAAGGTTCCAGCtgaactgcacagagttttggTAGTGATTGTATACCTTTGAACAGCCACCATTTATGGTCACTATAATGCTAATAGAAAAACCTATTTGTTGCAAAAATTCTTAACAAACTACATAGCGCAGTTTGAATGGGTAGTCCAGGATCATCATTTCTGTATTAGTAAACCACCGTACTGAAAAGCTGAAA

Function


GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU390105 lncRNA upstream 90533 8748820 ~ 8749033 (+) True G329288
TU389928 lncRNA upstream 140406 8694403 ~ 8699160 (+) True G329126
TU389908 lncRNA upstream 173730 8652436 ~ 8665836 (+) True G329111
TU389845 lncRNA upstream 460832 8374954 ~ 8378734 (+) False osr2
TU389833 lncRNA upstream 502984 8336352 ~ 8336582 (+) True G329042
TU390192 lncRNA downstream 91562 8942878 ~ 8945556 (+) True G329354
TU390202 lncRNA downstream 121921 8973237 ~ 8973587 (+) True G329361
TU390394 lncRNA downstream 483870 9335186 ~ 9335808 (+) True G329523
TU390393 lncRNA downstream 500834 9352150 ~ 9352733 (+) True G329522
XR_004576957.1 lncRNA downstream 621300 9472616 ~ 9482817 (+) True LOC117595781
XM_034297944.1 mRNA upstream 18255 8768746 ~ 8821311 (+) True LOC113532648
XM_034297945.1 mRNA upstream 18255 8768746 ~ 8821311 (+) False LOC113532648
XM_034297946.1 mRNA upstream 18255 8768746 ~ 8821311 (+) False LOC113532648
XM_026924114.2 mRNA upstream 93596 8677355 ~ 8745970 (+) True atp6v0a1b
XM_026924116.2 mRNA upstream 93596 8677355 ~ 8745970 (+) False atp6v0a1b
XM_034298066.1 mRNA downstream 88 8851404 ~ 8922793 (+) True bmp6
XM_034298065.1 mRNA downstream 1148 8852464 ~ 8922793 (+) False bmp6
XM_034298063.1 mRNA downstream 1698 8853014 ~ 8922793 (+) False bmp6
XM_034298064.1 mRNA downstream 1698 8853014 ~ 8922793 (+) False bmp6
XM_026924126.2 mRNA downstream 1698 8853014 ~ 8922793 (+) False bmp6
XR_004576948.1 other upstream 20299 8768746 ~ 8819267 (+) False LOC113532648
XR_004576949.1 other upstream 24006 8768745 ~ 8815560 (+) False LOC113532648
TU389909 other upstream 173730 8615073 ~ 8665836 (+) False G329111
XR_004576973.1 other upstream 354733 8388187 ~ 8484833 (+) False LOC113532774
TU389428 other upstream 936958 7901792 ~ 7902608 (+) False LOC113532663
TU390118 other downstream 2012 8853328 ~ 8856276 (+) False bmp6
TU390686 other downstream 940368 9791684 ~ 9792733 (+) True G329779
TU390970 other downstream 1580017 10431333 ~ 10432864 (+) True G330038
TU390999 other downstream 1743886 10595202 ~ 10678375 (+) False gli3
XR_004576967.1 other downstream 2022893 10874209 ~ 10984209 (+) True acad11

Expression Profile